KEGG T04918: 107587984

Sinocyclocheilus grahami (golden-line barbel): 107587984

Entry

107587984         CDS       T04918

Name

(RefSeq) collagen alpha-1(XI) chain-like

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

sgh Sinocyclocheilus grahami (golden-line barbel)

Pathway

sgh04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:sgh00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107587984
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sgh00536]
    107587984
Glycosaminoglycan binding proteins [BR:sgh00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   107587984

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1

Other DBs

NCBI-GeneID:

107587984

NCBI-ProteinID:

XP_016131454

Position

Unknown

AA seq 1553 aa
MRRLKETAVCAIVPLLLSLCTTTTHAANLIDVLRVLELSEDMEGVSVEAGLCTERKDTSE
TDMAYRIDKKIQLSAPTKQFFPDSAFPENFSLMTTVKAKKNSQFFLVSLYDEQGVQQLGL
ELGRSPVFLYEDHQGQPAPDLYPIFKKINLADGKWHRIAYSVEGKSVTLYLDCKKEQTLE
LMRGESPAVSTDGVVVFGTRLLDEEVFEGEIQQLLLVDDPQAAADYCQDYIPDCDSPLPY
STQSLAPEEGPEGRPGLPGADGIPGPPGTLLMLPFQYGGDSQKGPVISAQEAQAQAILQQ
TKLSLKGPPGPLGLTGRPGPVGLPGPSGLKGDSGEPGHAGPRGLPGPAGLNGKPGKRGRS
GADGGRGAPGETGAKGLRGLVGPRGPPGSLGQQGIQGVDGVQGAKGNLGPPGEPGPPGQQ
GNPGIQGFPGPQGPIGLPGEKGPEGKPGMQGLPGIDGPPGHPGREGPPGEKGHQGLSGAQ
GPVGYPGPRGVKGADGVRGLKGSKGEKGEEGFPGAKGDMGIKGDRGDNGAPGSHGEDGPE
GPKGQSGSLGEAGSAGIAGEKGKLGVPGLPGYPGRQGSKGSVGFPGTAGVEGEKGKRGSA
GQAGPDGERGPNGARGGRGARGPTGNPGAKGSAGHDGPQGAAGERGPQGPQGRDGEAGPK
GPNGPPGKDGLPGHPGQRGEPGFQGKTGSPGPAGVVGPQGKTGETGPTGDRGHPGAPGPP
GEQGLPGVTGKEGAKGDPGPAGLPGKSGPAGRHGFRGERGLPGTPGTAGLKGGEGPPGVA
GPIGATGERGPAGPAGVIGQPGRTGGVGPPGPMGEKGEPGEKGSIGPAGRDGEQGPVGLP
GPAGSPGPPGEDGDKGETGGPGQKGSKGDKGEGGPPGPPGSQGPPGQPGSPGLDGEPGPR
GQQGMYGPKGDEGSHGFKGATGPPGLQGMPGPPGEKGESGHVGAMGPPGQHGPRGPQGPI
GGEGPQGMPGGVGQPGMVGEKGEDGEAGNPGNVGETGPPGDKGEVGEKGDTGSPGAAGPP
GIRGTPGSDGPKGHLGPLGFPGDAGPPGEPGANGIDGGPGAKGDNGEPGKAGPPGASGEP
GPPGPPGRRGHVGPEGKEGKQGKKGAKGSAGAEGPMGKTGPVGPQGHPGNPGPEGLRGIP
GSAGEQGLNGPPGQTGPPGPMGPAGLPGLKGDPGIKGDKGHVGLIGLIGPPGEMGEKGDR
GLPGNQGVQGSKGDGGVGGPPGPTGPPGPPGLFGAIGEKGSKGDQGAIGARGDPGPAGPT
GPPGPPATMIEPLPFREGRKKRRRHSNRQGLGARAESEDEEAVQLNMEDFLQADESLDDP
EGMEEVFASLNSMKTEVELMRKPLGTFESPARTCKELMLCHPEYKDGEYWIDPNQGCHRD
SIKVFCNFTAEGETCLHPDKRFEMVKLAAWNKEKPGSWYSQYRKGKQFSYIDTDGNPVPV
VQLTFLKLLSATAMQTFTYSCQNSVGWYDVTSHSHQFAIRFRGSNDEEMTQAKSPFITAL
YDGCQTHKGQERTVLQIDSPRSELLPVIDVAVSDFGNNNQKFGFHVGPVCFNG

NT seq 4662 nt +upstreamnt +downstreamnt
atgaggcgtctgaaggagactgcggtctgcgcgatagtgccgctgcttctctctctgtgc
accacaacgacgcatgcagctaatctgatcgatgtattacgggtactggagctgtctgaa
gacatggagggagtgtcagtggaggccggcctgtgcaccgaaagaaaggacacatcagaa
acagacatggcttacaggatcgacaaaaagattcaactcagtgccccaactaaacagttc
tttccagattctgctttccctgagaacttctctctgatgaccactgtcaaggctaagaag
aactctcaattcttcctggtgtctttgtatgatgagcagggagtccaacagctggggctg
gagcttggccgatcgcctgtattcctctatgaagaccaccaaggccagccagctccagat
ctctaccccatttttaagaaaatcaatctggctgatgggaaatggcatcggatagcctac
agcgtggagggcaagtctgttacgctctacctggactgtaagaaggagcagacgctggaa
ttgatgcgtggagagagccctgcggtcagcacggacggagtcgttgtttttgggacgcgg
ctgctagatgaggaagtatttgagggtgagatccagcagctcttgctcgtggatgatcct
caggctgcggctgactactgccaagattacattcctgattgtgacagccctttgccctac
agtacccagagtctggctcctgaagagggtcctgagggacgtccagggctgcctggcgct
gatgggataccgggtcctccaggcactttgcttatgttacccttccagtatggaggagac
tctcagaaggggcctgtgatatcggctcaagaggcgcaggctcaagccatcttacaacag
accaaactatcattgaagggccctccaggtccattaggtctcaccgggaggccgggccca
gtgggtctaccaggtcccagtggactaaaaggggacagtggagagcctgggcatgcgggc
ccacgtgggttgccaggtcctgctggtcttaatgggaaaccagggaaaaggggtcgatca
ggggcagatggaggtcgaggggctcccggagagacaggagcaaaggggctaagaggactt
gtggggccaagagggccacctggctcacttgggcagcagggaattcaaggcgtcgatggt
gttcaaggggcaaagggcaacttgggaccacctggtgagcctggacctccaggtcaacag
gggaacccaggcatacagggcttccctggtccacaggggcctataggcctgccaggagag
aagggccctgagggcaaacctggaatgcagggccttcctgggattgatggtcctccaggt
catcctggaagagagggaccccctggggagaaaggacaccagggtttatcaggagcacaa
gggccggttggatatcccgggccccgtggagtcaagggcgcagatggggtgaggggactg
aagggtagcaagggggagaagggtgaagaaggtttcccaggggccaagggtgacatgggc
atcaaaggagatagaggtgataatggggctcctggaagtcatggtgaagatggaccagaa
gggccgaagggtcagtcaggatccctgggagaggctggatctgcgggcattgctggagaa
aagggcaaacttggtgttccaggattgcctggatatcccggcaggcaaggctcaaaggga
tcagtgggctttcctggaacagctggggtggaaggagagaaaggaaagaggggttctgct
ggacaggctggtcccgatggtgaaagaggtccaaatggtgcacgtgggggaagaggagca
agaggaccgacaggaaaccctggagccaagggctctgctggtcatgacggcccacaaggt
gccgcaggagagagaggccctcaaggtccacaaggacgcgatggagaagccgggccaaag
ggaccaaacggccctccaggaaaggacgggttgccaggtcatccaggccaacggggagag
ccgggatttcaaggaaagactggatcccctgggcctgctggagtggttggcccacaggga
aagactggggagactggccccaccggtgacaggggacatccgggtgccccaggacctcct
ggagagcaaggtctaccaggagtcacaggcaaagagggagccaagggagatccaggccct
gcagggctgcccgggaagagtggtcctgctggacgtcatggattcagaggagaaagaggc
ttacctggcactccgggtactgcaggtttgaagggtggggagggcccccctggtgttgca
ggaccaataggtgccacaggagaaagaggacccgctggacctgcaggtgtcattggtcag
cctggccgtacgggaggtgtcggcccccctggaccaatgggagagaagggcgagccgggt
gagaaaggttcaattggtcctgctgggcgagatggagaacaagggcctgtgggattacct
ggtcctgcagggtcgcctggtccacctggagaggacggagataagggggagacaggagga
ccaggacagaaaggcagcaaaggagacaagggagaggggggtcccccagggccgcctggg
agccaaggacctcctggacagccaggatcaccaggtctggatggagagccagggccccgg
ggacagcaaggaatgtacggccctaaaggagatgaaggttctcatggttttaaaggggca
actggaccaccagggttgcagggaatgccaggaccccctggagagaagggagagagtggc
catgttggagctatgggccctccaggacaacatggcccgcgtggcccccagggacccatt
gggggagagggtcctcagggcatgccgggcggagtgggccagccaggaatggtgggagaa
aagggtgaggatggagaagcagggaatccaggaaatgtgggcgaaactggcccccctgga
gacaaaggtgaagtgggcgagaagggtgatactggctcccctggggctgcaggaccccca
ggaatcagaggcacacctggatcagatggacccaaaggacacctaggtccccttggattt
cctggagatgcgggacccccaggagagccaggtgctaatggtattgatggtggcccagga
gctaaaggggataatggcgaacctggcaaagctggacccccaggagcctcaggagagcct
ggccctccagggccacctggaaggaggggtcatgtaggccctgagggaaaagaagggaaa
cagggaaaaaagggggcaaagggttctgctggtgccgagggtccaatgggaaaaacaggg
cctgttggaccacagggacaccctggaaaccctggtccagagggtttgcgtgggattcca
ggctctgctggggagcaagggttaaatgggcccccagggcaaacgggacccccaggacct
atgggtccagctggattaccaggactgaaaggagatcccggcattaaaggagataagggt
catgttgggctgattggactgattggacctccaggagagatgggagagaaaggagatcga
ggcctgccgggaaatcagggagtacaaggctctaaaggagatggtggtgttggtggtccc
ccaggcccgactggtccacctggaccccctgggttgtttggtgcaataggtgagaaggga
tctaaaggagaccagggagccatcggtgcaagaggagatccaggacctgctggcccaact
ggaccacctggcccaccagccactatgatcgagcctctgccattcagagagggacgtaaa
aagcgaaggagacactcaaaccgacaaggactcggagccagggcagagagcgaagacgag
gaagcagtccagctcaacatggaggatttcctacaggcagacgagtctctggatgaccca
gaaggcatggaggaggtgttcgcttcactcaactcaatgaaaacagaggtggagctcatg
agaaaaccactcgggaccttcgagagtcctgcccgcacatgcaaggagctgatgttgtgt
catccagaatacaaagatggtgaatattggattgacccaaaccaaggctgccatcgagac
tccattaaggttttctgcaacttcactgcggagggggagacctgtctgcaccctgataaa
cgatttgaaatggtgaagctggccgcctggaacaaagaaaaaccgggcagttggtacagc
cagtaccgaaagggcaaacagttctcctacattgacactgatggaaatccagttcctgtg
gtccagctgaccttcctgaagctcctcagtgccacagctatgcagaccttcacctatagc
tgccagaactctgtcggctggtacgacgtgacgagccacagccatcaatttgccatacgg
ttccgtggaagcaatgacgaggagatgacgcaagccaaatcaccctttatcacagcactg
tatgatggttgtcagacacataagggtcaggagaggaccgtgctgcagattgactctccg
cgatccgagcttcttccggtcatagatgtggcagtatcagactttgggaataacaaccag
aagtttggcttccatgttggaccagtgtgttttaatggctaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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