KEGG   Sinocyclocheilus grahami (golden-line barbel): 107595613
Entry
107595613         CDS       T04918                                 
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
  KO
K12599  antiviral helicase SKI2 [EC:3.6.4.13]
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107595613 (skiv2l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107595613 (skiv2l)
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107595613 (skiv2l)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     107595613 (skiv2l)
SSDB
Motif
Pfam: DSHCT Ski2_N MTR4_beta-barrel DEAD Helicase_C ResIII DUF5958
Other DBs
NCBI-GeneID: 107595613
NCBI-ProteinID: XP_016141563
Position
Unknown
AA seq 1208 aa
MDKTDLPPVGPDDLPLSLLEMGCSGRLELITHPLPQNRPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHGVDDAFHKFLKISKRNKEVDSLLHCSLSPLHSGLSVIRDPTTGML
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFEEDLLMVPPGLKAGMDFSDKEAKTTKSELNLLSLLSTFGDGIDALPEEKEGVSQ
KEETVKLPRTNSLEDLGIKDSGNSPSQPSANTVSLTEQKKKPQQEDKGDNKKWAVPVDIS
SPCDDFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKATFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRI
KKRPIYVISTIKRPVPLEHYLYTGNSTKTQKELFLLLDPSGNFLTKGYYAAVEAKKERTS
KHAQSFGTKNVSQHNTTASQDRAVWQTLLSYLSQRQQTPVVAFTFSRTRCDENARSLTSL
DLTNSIEKSEIYSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEIIEM
LFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL
DATGTVIILCKAGVHDMGDLHAMMLILRKKRISELRNTLSSLPPLDTEGQLSDLVSYYHT
ITELCITTETLQRAVLESMNGLKALSVGRVVIVNNGQHHNALAVILQVSNDAVNRTFTAL
IICEKGNEEAASDDLSNKAFHPIYSTTLFIPEGPCSHTVQKLKLQDISAITTKTLKVIPE
RIIDNYNKRQQPRFRLDPPGQAISTATQELLRLAEANPNGITTLDPVNDLHLKGVDVVEG
VMRHRVLQDCLKDFHCIHSPTFTEQFARVQERMSVQEELDKLLFLVSDQSLTLLPEYHQR
IKVLEALQYVDSTGAVQLKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLIFT
QNTQIDPHITNTLQEGINQVLSVAQRIGELQMDCGIAQTAEDFVAQFKFGLTEVVYCWAR
GMPFAEIAQLTDVQEGTIVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAVRRDIV
FTASLYTH
NT seq 3627 nt   +upstreamnt  +downstreamnt
atggacaaaacagatttgcccccagtgggtcctgatgatttgcccctgtctctgctggag
atgggctgctcggggagacttgagctcatcacacacccactgccccaaaacagacccctg
cctccacacagcacacttccccatgggctccctcctacttgtctagatctaaaaacagag
gtagaaaagcgttttctgcgagaccctgcttggctcccggtacacggtgtagatgatgcc
ttccacaagttccttaagataagtaagcggaacaaagaggtggactctctcctgcactgc
tcactgtctccactgcactccggtctgtctgtgatcagagatcccaccaccggtatgctg
ctggatttcactgaggtgttattagaggacacaggattgtctgccaaaaattctctctca
ttacaaagacagcctggacctccgtcagagagtctgagagggagtaacacaaactatcca
tttctgccaggtggaatggaagaactgacgttagagcagattaagaaaaagtcagagctg
gaagaagacattgactttgaggaagatttgttgatggttcctcctgggctgaaggctggt
atggacttcagtgacaaagaagccaaaaccacgaagagtgagttgaacctgttgtcacta
ctgtcgacctttggtgatggcatcgacgctctgccagaggagaaagagggagtctcccaa
aaagaggagaccgttaaacttcccagaactaacagcctggaggacctgggcattaaagat
tcaggcaactctccttctcagccttcagcgaacacagtaagtctgactgagcaaaagaag
aaacctcagcaagaagacaagggagacaataaaaaatgggccgttcctgtggacatcagc
tcaccctgtgacgacttctacaagcgtatacctgatccagccttcaagtatcccttcgag
ctggacgtgtttcagaagcaggctattctccgactcgaagctcatgactccgtctttgtc
gcggctcacacctcagccggcaagaccgtggtggctgaatacgcaattgcactttcccag
aaacacatgaccaggaccatttacacatcccccatcaaggccttgtccaatcagaagttc
cgggacttcaaggccacattcggtgacgtgggactgttgactggagatgtccaactgagc
cctgaagcctcgtgtctcatcatgaccactgagatcttgagatctatgctctataatggg
tccgaggtcattcgagatctggaatgggtcatttttgatgaggttcactatatcaatgat
gcagagaggggagtggtgtgggaggaagtgcttatcatgttgccagagcatgttagcatc
atcctactgagtgccacagtgccaaacgcagtggagttcagtgaatggatcgggcgtatc
aagaagcggcccatctatgtgatcagcacaattaagaggcctgttcctctagagcactat
ctctataccggcaacagcaccaagactcagaaagagctcttcctgttgctcgacccctct
ggaaacttcctcactaaaggctactatgccgcagtggaagccaagaaggaacgcactagt
aaacatgcacagtctttcggcacaaagaacgtgtcacagcacaacacaacagccagtcaa
gatcgagccgtgtggcagacgctgctgagctatctgtctcagaggcagcagactccagtg
gtggcgttcaccttctcccggacacgctgtgatgaaaacgcccgctctttgacctctctg
gacctcaccaactccatagagaagagcgagatctactccttcctgcagaagagcctgacc
agactgagaggaggcgatcggcagttgccacagatcctgttgatgcgtgatttgctgaag
agagggattggtgttcaccacagcggcatcctgccaatcctgaaggagattattgagatg
ctcttctccagaggtttagtaaaggtgctgtttgctacagagacgtttgccatgggtgtg
aacatgcctgccagaaccgtcgtgttcgacagcatccgcaaacatgacggcacaggcttc
agaaacctgctgcccggtgagtacattcagatggcgggccgtgcgggcagaagaggtttg
gatgctacagggactgttatcatcctctgtaaggcgggagttcatgatatgggagacctc
cacgccatgatgctgatcctcagaaagaagagaataagtgagctgagaaacacactctca
tctctccctccgctggacacagaggggcagttatctgatttagtgtcatattaccacacc
atcacagagctgtgcatcaccacagagaccctgcagcgagctgtactggagtcaatgaat
ggactgaaagctctgtctgtggggagggtggtaatagtgaacaacggccagcatcacaac
gccctggcagtcattctacaggtgtccaacgatgcagtaaatcgcacgttcaccgctctc
attatctgtgagaagggtaacgaggaggcggcgagtgatgatctgtctaataaagccttc
catcccatctacagcactacactgtttattccagagggaccctgcagtcacacggtgcag
aaactgaagttgcaggacatctctgccatcacaaccaaaaccctcaaggtcattccagag
agaatcatcgacaactataataaaagacagcagccacgcttcagacttgatccaccaggt
caggctatttctacagcaactcaggagctcctgcgattggctgaggccaatccaaatggt
attacgaccctggaccctgtgaatgacctgcacctgaagggtgtggatgtggtggaggga
gtgatgaggcaccgagtgttacaggactgtctgaaagacttccactgtatccactcaccc
accttcactgaacagtttgcacgtgtgcaggagaggatgagtgtacaggaagagcttgac
aagcttctgttcctggtgtctgatcagtcattgacactgctgcctgagtaccatcagaga
atcaaggtgctggaagcgctgcagtatgtggacagcactggggcggttcagctgaagggt
cgtgtggcgtgtcagatcagcagtcatgagctgctactcactgaactcctgtttgagaac
acactgagtcctctcgcccctgaggagagcgccgccctgctgtcctgcctcatcttcaca
caaaacacccagatagacccgcacatcaccaacacgctacaggagggcatcaatcaagta
ctcagtgtggcacagcgtattggtgagctgcagatggattgtgggatagctcagactgct
gaagactttgtggcccagttcaagttcggcctgactgaggttgtgtactgctgggcaaga
ggcatgccgtttgctgagattgcccagctgacggatgtgcaggaggggacgatcgtacgc
tgtatccagaggctggacgaggtcctgaaggaagtgagacaggctgcgcgcattgtgggt
gactctgtcctgggcagcaagatggaaagagcctcgctggccgtacgcagagacattgtg
ttcactgcctcgctctacactcactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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