KEGG T01429: Sgly

Syntrophobotulus glycolicus: Sgly_0962

Entry

Sgly_0962 CDS T01429

Definition

ATP-dependent DNA ligase subunit LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sgy Syntrophobotulus glycolicus

Pathway

sgy03410	Base excision repair
sgy03420	Nucleotide excision repair
sgy03430	Mismatch repair
sgy03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sgy03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sgy03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sgy03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sgy03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

948890..951331

AA seq 813 aa
MDRKLNDYNEKRNFARTTEPEGAREMAREGLRFVVQHHLARRDHYDFRLEWDGALLSWAV
PKGPSYNTRDKRLAVQVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGYWEPDGNVDDGLR
AGMLKFVLKGRRLKGKWALVRLKKKAGETKDNWLLLKEKDQYAKTGDEVSQFATSIRTGR
TMKEIEEGEDEKITPNPFGSTGVQLAKLVRMVPEGEDWLYELKYDGYRIVAYMEGGSARL
LTRNGRDYTARFPDVASSLSDWAGGRAMILDGEMAVTDAAGRTDFQALQNYLNNAQAQSL
TYIIFDLLALDGADLRGHRLLDRKGTLEALLKDAPENLYYSRHVSGNGRESFAAACAAGL
EGIIGKKADSLYSGTRNGDWIKLKCEQRQEFVIGGYTLSAKKTSGVSSLLLGVYEGQGLV
YAGRAGTGLSEAGRRELAEKFAGRERTEPPFRLPPKARANEKITWLEPELVAEIKFAEWT
KDDLLRQASFKGLRTDKKPEEIKREKTDGERQPPPSAKETERAMEANTNSIMIEGIKITN
PDKVIFTDPETTKGDVVRYYAQVAERMLPYVSRRVLSIVRCPKGIAQTCFYKKHPGPGSK
GIVTIPVTNSDGETEEYFYIENTSGLIAEAQMGTLEFHTWGSRADELEKPDLMVFDLDPD
EGMDLSRVRQGVRDMKDLLTELSLRAYLKTSGGKGYHVVVPLKPSVSWDRFYDFARRVAE
VMEQKWPDRYTSNVRKAKRAGKIFIDWMRNGRGATSIAPYSLRAREGTRVSMPIAWEELD
TVAPDSVNMAEALRRIGGNDPWQGFFRNGQQLK

NT seq 2442 nt +upstreamnt +downstreamnt
atggatagaaagctgaacgactacaacgaaaaaaggaattttgccaggaccacggaaccg
gaaggggcaagagaaatggcccgggaaggcttaaggtttgtcgtccagcaccatctggcc
cgcagggatcactatgatttccgcctggaatgggacggagctctcttgagctgggccgtg
cccaagggaccttcctataatacccgggataagaggctggccgtccaggtggaggaccat
cccctggaatacaggaactttgaggggacgattcccaaaggggaatatggcggcggagtc
gtcatgctctgggatgaagggtactgggaaccggatgggaatgtggacgacgggctccgc
gcagggatgctgaagtttgtgctcaaaggacggaggctgaagggaaagtgggctttggtg
cgcttgaaaaagaaagcgggcgagaccaaggataactggctgctgctgaaagaaaaagat
cagtatgccaaaaccggcgacgaggtttcccagtttgccaccagcatcagaaccggacgc
accatgaaggaaatcgaagaaggggaggacgaaaagatcaccccaaaccccttcggcagt
accggcgtgcagctggccaaattagtgcggatggttcctgaaggggaggattggctctat
gagctgaaatacgacggctacaggatagtggcgtatatggagggcggcagcgcccgcctt
ctgaccaggaatggccgggattatacggcgcggtttccggatgtcgcctcttcccttagc
gattgggccggaggaagggccatgattctggacggcgaaatggccgtcacggatgcagcg
ggcaggacagattttcaggcgctccagaactatctgaacaatgctcaggcccaaagcctg
acctatatcatctttgatctcctggccctggatggggcggacctccggggacaccgcctg
cttgaccggaagggaaccctggaagcgttgctgaaggatgcccctgaaaacctctactac
agccggcatgtgagcggaaacggcagggaaagcttcgctgcggcctgtgccgcaggtctg
gaaggaatcatcggcaaaaaagcggattccctctacagcggaaccagaaacggggactgg
atcaagctgaaatgcgagcaacggcaggaatttgtgatcgggggctataccctttccgcg
aaaaagacgagcggggtcagctccctgctcctgggggtttacgaaggtcagggattggtc
tatgccggccgggccggcacgggcttaagtgaagcgggccggagagagcttgcggaaaaa
tttgcgggcagagagagaacggagcctcctttccggcttccgcccaaggccagggcaaac
gagaaaatcacctggctggagcctgagctggtcgcggaaatcaaatttgccgaatggacc
aaggatgatctgttaaggcaggccagcttcaaaggcctgcggacggacaagaagcctgag
gagatcaaaagggaaaaaacggatggggaaagacagcccccgccgtccgccaaagaaacg
gagagagccatggaagcaaacaccaacagcatcatgatcgaaggaatcaagatcacaaat
ccggacaaggtaatctttaccgaccctgaaaccaccaaaggggatgtggtccggtactac
gcccaggtggcggagcgcatgctgccttatgtgagccgcagggtgctcagcatcgtccgc
tgccctaagggcatcgcccagacctgcttttataaaaagcatcccggccccggcagcaag
ggaatcgtcaccatcccggtcaccaacagcgacggagaaaccgaggaatatttttatata
gagaacacctccggactgattgctgaagcccaaatgggcaccctggaatttcatacctgg
ggaagccgggcggacgagctggaaaagcctgatctgatggtttttgatctggacccggat
gaaggaatggatctgagcagggtgcgccagggtgtgcgggatatgaaagatcttctcacc
gagctttccttgcgggcctacctgaaaaccagcggcggcaaggggtatcatgtggtcgtc
ccgctaaagccctctgtttcctgggaccggttttacgattttgccaggcgggttgccgaa
gtgatggagcagaaatggcctgaccgttacaccagcaatgtgagaaaggccaagcgcgcg
ggcaagatctttatcgactggatgcgcaacggcagaggggcgaccagtattgccccctat
tccctgagagcgagggaagggaccagagtgtccatgcccattgcctgggaggagctggat
acggtggctccggacagtgtcaatatggcggaggcgctgcggcggatcggcggcaatgac
ccctggcagggtttcttccggaacgggcagcagctgaaatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SGY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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