KEGG   Salmonella enterica subsp. enterica serovar Heidelberg B182: SU5_03543
Entry
SU5_03543         CDS       T02011                                 
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shb  Salmonella enterica subsp. enterica serovar Heidelberg B182
Pathway
shb03410  Base excision repair
shb03430  Mismatch repair
shb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SU5_03543
   03430 Mismatch repair
    SU5_03543
   03440 Homologous recombination
    SU5_03543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shb03400]
    SU5_03543
DNA repair and recombination proteins [BR:shb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     SU5_03543
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     SU5_03543
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SU5_03543
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB PEP-utilizers Glyco_transf_4
Other DBs
NCBI-ProteinID: AFH46869
Position
complement(3882692..3884425)
AA seq 577 aa
MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA
VEILYNAFREGIRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE
VVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLR
DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
DLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME
VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTT
CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDIWPL
NT seq 1734 nt   +upstreamnt  +downstreamnt
gtgaaacaacagagacaacttcgtcggcgcgaggctgatgagacggcggaactccccgcc
gatcttcctccattactacgacgtctatatgccagccggggcgttcgtagcgcccgcgaa
ctggagcgcagcgtgaaaggaatgctgccctggcaacagcttagcggcatagataacgcg
gtggagatcctctacaacgcctttcgcgaaggtatccgcattattgttgttggcgatttt
gacgccgacggcgcgaccagtactgcgctaagcgtattgggaatgcgtgcgttgggatgt
gacaacatcagttatctggtgcctaatcgctttgaggacggctacggtttaagcccggaa
gtggtcgatcaggcgaaggcgcgcggcgcgcagcttatcgtcaccgtagacaacggcatt
tcatcccacgccggcgtagcgcatgcaaagacgttggggattccggtgatcgtgaccgat
caccacctgccaggcgacacgttgccggatgccgaagcgattattaatcccaatctgcgc
gactgcgaattcccgtctaagtcgctggcgggcgtcggcgtggcgttttacctgatgctg
gcgttgcgaacatttttgcgcgacaaaggatggttcgacgagcgcaacatcgcgccgccg
aatctggcggagctgctggatttagtggcgttgggtacggtagcagacgttgtgccgctg
gacgccaacaaccgtattctgacctggcaagggctaagtcgtattcgtgccgggaaatgc
cgtccgggaattaaagcgttgctggagatatcgaatcgcgatccgcagcagcttgccgcc
agtgatttaggcttcgcgttggggcctcgcctgaatgccgccggcaggctggatgatatg
tccgttggcgtggcgttactgttgtgcgacaacctcggcgaagcgcgtgttctggccagc
gagctggatgcgcttaaccagacgcgcaaagaaatagagcaggggatgcaggcggaagcg
cttatcctgtgcgaaaagcttgagcgcagtagtgaaacgcttccgggcggtctggcgatg
tatcatcctgaatggcaccagggcgtggtcggaattctggcgtcgcgcattaaagagcgt
tttcaccgcccggtgatcgcctttgcgcctgcgggcgacggcacgctaaaaggctcaggc
cgatcgattcaggggctgcatatgcgcgatgcgctggaacggctggataccctttaccct
gatctgatgatcaagttcggcggccatgcgatggcggcgggattgtcgctggaagagcat
aaattcgagcagtttcagcaacggtttggcgagctggtgacggaatggctcgatcctgcc
ctgttgcaaggcgaggtgatctccgatggtccattaagcgcggcggagatgtctatggaa
gtggcgcaactgttgcgggatgccggaccgtgggggcaaatgttcccggaaccgttattc
gatggtcgtttccgtctgctacagcagcgtctggtgggcgagcgtcacctcaaggtgatg
gtggagcctgtcggcggcggcccgctgttggatggcatcgcatttaatattgatacgacc
tgttggccggataacggcgtgcgggaggtagaactggcttataaactggacattaacgag
tttcgcggcaaccgtagtttacagattattatcgatgatatttggccgctatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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