KEGG   Shewanella sp. MR-4: Shewmr4_0193
Entry
Shewmr4_0193      CDS       T00388                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
she  Shewanella sp. MR-4
Pathway
she03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:she00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Shewmr4_0193
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:she03021]
    Shewmr4_0193
   03400 DNA repair and recombination proteins [BR:she03400]
    Shewmr4_0193
Enzymes [BR:she01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Shewmr4_0193
Transcription machinery [BR:she03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Shewmr4_0193
DNA repair and recombination proteins [BR:she03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Shewmr4_0193
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABI37274
UniProt: Q0HNU3
Position
220305..224522
AA seq 1405 aa
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVMYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq 4218 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccggtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaaactatctggacgcattagaagaatacggtgacgaattcgaagctaagatg
ggtgctgaagcggtattagaactgctgcgcgcgatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacttctggcaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatttgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttattaggtaagcgtgttgactactctggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagctgctaagaagatg
gtcgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagct
cgtgccctgatgatgtcaaccaacaacatcctgtcacctgcgaacggcgagcctgtaatc
actccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgaacaacgtcgtatcgtagatacaacagtgggtcgtgctctgctgtca
caaattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcaa
atttctaagctattgaacacttgttaccgtcaattaggtctgaaagataccgttatcttc
gctgaccaactgatgtacacaggtttccgttacgccactatctctggtgcatctgtcggt
atcgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgaaattcaagagcagttccaatcaggtctggtgaccgcgggtgagcgttacaac
aaagtaatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcttcgttcaac
agcatttacatgatggccgactcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcatcgaaaccccaatcgtg
gcgaacttccgtgaaggtctgaacgttcttcagtacttcatctcaacccacggtgcgcgt
aaaggtctagccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgctcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtctg
acaatgaagccgctgatcgaaggtggtgacgttgttgagccattacgtgaacgcgtactg
ggtcgtgtggttgctgttgatgttatgtacccaggtacagaagatgtgcttgcgccacgt
aacactctgctcgatgaagcatggtgtgacaagttagaagaacactcaatcgacgaagtg
attgtacgttcagtaattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagctatcggtgttgtcgcggcg
caatcaatcggtgaacctggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcgagagcgtctgcagaaaacaacgttcaagtgaagaactctggttcgttgaaactg
cacaacgctaagtacgtgactaacactgacggcaagctggttatcgtttctcgttcttct
gaactggcgatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagcatcagtagaagcgggcgatatcatcgctaactgg
gatccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgacaggtctgtcatcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctt
gttggtgccgacggtagcgacctgatgatcccaggtactgaagtgccggcacaatacttc
ttaccaggcagtgcgatcgttaaccttgacgacaatgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagcccgtaagccaaaagagccagctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggcaagcgtcgtctggtgatcacaccagcg
gatggcggagaacattacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaggcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagcaaactacattgtgaatgaagtacaagacgta
taccgtctacaaggcgtgaagatcaacgataaacatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagtc
gaagtgtctcgcgtcaagattgctaaccgcgaacttgtcgaacaaggcaaagtgcctgcg
accttcgaacgtgaactgctgggtattaccaaagcgtctctggcaacagaatcgtttatc
tctgcagcatcattccaagaaacgactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgcctgatcccagccggt
actggttatgcttatcacaagactcgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaatctcgcagacctgttaaacttg
gctggcagccaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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