KEGG   Shewanella sp. MR-4: Shewmr4_0224
Entry
Shewmr4_0224      CDS       T00388                                 
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
she  Shewanella sp. MR-4
Pathway
she03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:she00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Shewmr4_0224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:she03021]
    Shewmr4_0224
   03400 DNA repair and recombination proteins [BR:she03400]
    Shewmr4_0224
Enzymes [BR:she01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Shewmr4_0224
Transcription machinery [BR:she03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Shewmr4_0224
DNA repair and recombination proteins [BR:she03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Shewmr4_0224
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2
Other DBs
NCBI-ProteinID: ABI37305
UniProt: Q0HNR2
Position
241589..242578
AA seq 329 aa
MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGD
VTIVNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
MKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatatcgagcaggttaac
tcaacacgtgccaaggttactttggaaccgcttgagcgtggtttcggccacactttaggt
aacgcgttgcgtcgcatcctattgtcgtctatgcccggctgcgcggttaccgaagtcgag
attgacggcgtgctgcacgaatacagcagtaaggaaggcgtacaagaagatatccttgaa
atcttgctgaacctgaaagggttagcagtgactatcgagggtaaagacgaggctatgctt
acattaagcaagtccggcgcaggccctgtcatcgcagcagatatcacgcatgatggtgat
gtcactatcgtgaatcctgatcatgttatctgtcatttaacaggtaacaatgatatcagc
atgcgtattcgcgttgagcgtggtcgtggttatgtgccagcatctgctcgtgcacagact
gaagacgatgaccgcccaatcggccgcttgctggttgatgcttctttctcgccagttgca
cgtattgcctacaatgtagaagcagcacgtgtggaacagcgtactgacttggataaactc
gttatcgatatgaccactaacggtactatcgatcctgaggaagctatccgtcgttctgca
accatcttagctgaacagctggatgcgttcgttgagctgcgcgacgtgactgagccagaa
atgaaagaagagaagccggagttcgatccgattctgttgcgtcctgtcgacgatttagag
ctaactgtacgttcggctaactgcttgaaagccgaagcgattcattacatcggagatctg
gtacagcgtactgaagttgagctgctgaagacccctaacttaggtaagaaatctcttact
gaaattaaggacgttttagcttctcgcggactgtcgttaggtatgcgtctggaaaactgg
cctccagctagtttagcagacgacctataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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