KEGG T00388: Shewmr4

Shewanella sp. MR-4: Shewmr4_2405

Entry

Shewmr4_2405 CDS T00388

Definition

RNAse E (EC:3.1.4.-)

Orthology

K08300

ribonuclease E [EC:3.1.26.12]

Organism

she Shewanella sp. MR-4

Pathway

she03018

RNA degradation

Module

she_M00394

RNA degradosome

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:she03018]

SSDB

Motif

Pfam:

RNase_E_G S1

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2864659..2867940

AA seq 1093 aa
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL
KWDLKVLQHHWAAITEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
DYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPV
ANKVEATEPGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTR
NNQDADKAKEGTREPRTRNAKKSADAPQAQERPAREKDENAKRTKPEPKSRNQAPKEVVA
ESQDDTPKQEVARERRQRRNMRRKVRIDNANETTEAPIQEEVVLAEVAAVNAANTDVATE
PQAETKAPRSRRQPRKDAAVANETVEATDAASQVEANAEVSAEKPVVENRAEAPADVTEV
KTEAETDADNAELSADADDKAKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQGVSAPAQ
FVPNDALGDAQDYPAPTAQTAEAAETTEAKATEVAAEPTVTSPAAVVETADVSVVAETNK
AVETEVVESVATEQVAKLKAEVAVTEAPADTAVNNKPETSVKAEDVAVEPAKAVEAVTEA
IVTPAETPVAQAKTETVAVEAVAPEVEKAEVKDAVKSVASAPMAKPAPIVKPQAKPVVTQ
AVAAPAAETVVSKPKAASRFGSMVSSEMTKPTVEVRTQVEVPKGREYDNTASAEVTAPKL
KQSNSAESDMARP

NT seq 3282 nt +upstreamnt +downstreamnt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgccctcgttgac
gggcaacaactgtacgatctggatattgaaagtcctggtcacgagcaaaaaaaatccaac
atttacaagggtaaaatcacccgcgtagaaccctctttagaagccgctttcgttgactat
ggtgccgagcgccacggcttcttaccgctaaaagaaatcgccagagagtacttccctaaa
ggttattctttccaaggtcgcccaaacatcaaagaagtggtcagtgaaggacaagaagtt
attgttcaaattgacaaagaagagcgcggcaacaaaggtgctgcactgacgacctttatc
agccttgcaggttcttacttagtcctgatgccaaacaaccctcgtgctggcggtatttct
cgccgtatcgaaggtgatgagcgcaccgaattaaaagaggccatggccgatttagaagtg
cccgcaggtatgggacttatcgtgcgtaccgcgggtgttggcaaagaatcgactgaactg
aagtgggacttaaaagttctacaacaccactgggctgccattaccgaagccgcacaaagt
aaagccgctcctttcttaattcaccaagaaagtaacgtcattgtacgtgcaattcgtgat
tatctgcgccgtgatgtgggcgagatcctcatcgaccaccctcgcatttttgaagaagcc
aagcagcatatcgcactggtacgccctgatttcgtcgagcgcgtaaaactctacgaagcc
gaagtgccattgttcactcacttccaaatcgagtcgcaaatcgaatcggcattccaacgt
gaagtgcgcctgccatcgggtggttcgattgttatcgacccaactgaagcattaacctca
atcgatatcaactctgcccgcgcaacgaagggcggcgatattgaagaaaccgcattaaat
accaaccttgaagccgccgatgagattgcccgtcaattgcgtctgcgagacttaggtggt
ctggtcgtgatcgactttatcgatatgacgccagtgcgccatcaacgtgaagtagaaaac
cgcctgcgtgatgccgtgcaccatgaccgtgcccgcgtacaattaggccgcatttctcgc
ttcggtctgatggaaatgtcgcgtcaacgtctgcgtccatccttagaagaatcagctgca
catatctgccctcgctgtcatggccaaggcacgattcgtagtaccgaatctttagcgctg
tcgattctgcgtttgatggaagaagaagccatcaaggaaaacacctcacaaatcgaagcc
atcgtgcctgtcgatgtggcggccttcctgctgaacgaaaaacgcaaagcgattcgtatc
actgagcaacgccatgatgtagaagtctatgtgatcccagatccgcacatgatgactcct
gattatcgcgttattcgtcaccgcactgacgatgaaatcgatgaatccagctacaagcgc
atcgaacagccagaagctaagttatacgaaccccgtaaactggaacgcactgctgcgcca
gcaccagccttaaaaggcttcaccgcaccgcagaaagtcgaacaagccgctgcacctgtt
gccaacaaagtggaagcaaccgagccaggtttcttcagcaaactgttcagtgccattggc
gccttcttcagctcaagcgataaacctgcggcagaaaagaccacagaaaccaaaaagtct
gacagccaaacggccaatgcgaaccgtcgtaatcgtcgtaatgacactcgccgcactcgc
aataaccaagatgctgacaaagcgaaagaaggcacccgcgagccacgcactcgcaatgcc
aagaagtcggctgatgcacctcaggctcaagagcgcccagctcgtgaaaaagatgagaat
gcaaagcgcactaaaccagagcctaagagtcgtaatcaagcaccaaaagaagtggtagcc
gagtctcaagacgacacaccaaagcaagaagtggcccgtgagcgtcgtcagcgccgtaac
atgcgtcgtaaagtacgcatcgataacgccaatgaaacgaccgaagcgccaattcaagaa
gaagtggtattagccgaagtggccgccgttaatgcagccaatactgacgttgcaactgag
ccacaagctgagacgaaagcacctcgctcacgtcgccagccacgcaaagatgccgctgtt
gccaatgagacagtagaagcgactgacgcagcaagccaagtggaagcaaacgctgaagtt
agcgctgaaaagccagtggttgaaaaccgtgctgaggccccagctgacgtaactgaagtg
aagaccgaagccgagaccgatgcggataacgcagaactcagtgccgatgcggatgataaa
gcgaaacgcgaatctcgcgatggacaacgtcgtagtcgccgtagcccacgtcatttaaga
gcggccggtcaacgtcgtcgccgtgatgaagatgagcaaggcgtctctgcacctgcacaa
ttcgtaccaaacgatgcactcggtgatgctcaagactaccctgcgccaaccgctcaaact
gcagaagcagctgagaccacagaagcaaaagcaactgaagttgccgctgaaccgactgtc
acttctcctgcagctgtagtcgaaacggcagatgtcagtgtggttgctgaaaccaataaa
gctgttgagactgaagttgttgagtcagtagctaccgagcaagtggccaagcttaaagct
gaagttgcagtaacagaagctcctgctgacactgcggtaaataacaagccagagacgagc
gttaaggctgaagacgttgctgttgagccagctaaagcggtagaagcggttacagaagcc
attgtgaccccagctgaaactccagttgctcaagcgaaaacagaaactgtcgcagttgaa
gctgtcgcgcccgaagtggaaaaagccgaagtgaaagatgccgtgaaatcagtggcctca
gctccaatggcaaaacctgcgccaatcgttaaaccacaggcgaaacccgttgtgactcaa
gctgtcgcagcccctgcagctgaaaccgtggtgagcaaacccaaagccgctagccgtttt
ggttcaatggtgtcatcagagatgaccaagccgacggtagaagtcagaacacaggtagaa
gtgccaaaaggccgcgagtatgacaatactgcctcagccgaagtcactgcgcctaagctg
aagcaaagcaatagcgccgaatcggatatggctcgtccataa

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SHE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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