KEGG   Shewanella sp. MR-4: Shewmr4_3881Help
Entry
Shewmr4_3881      CDS       T00388                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
she  Shewanella sp. MR-4
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:she00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Shewmr4_3881
Enzymes [BR:she01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Shewmr4_3881
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Shewmr4_3881
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
4630989..4631804
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGIAPHLVEQTVVDLVIRNASLRWPVPELAKQIIGQTIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCQLP
EEAHPLLEKLGPEPLTDAFNVNQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTQCGNLLSEIRLGQRTTVFCGICQTR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgccggaattaccagaagtcgaagtcacccgtcagggcatagccccacatcttgtcgaa
caaaccgtggttgacctcgtaatccgtaacgcctcactgcgttggcccgttcccgaactt
gccaaacagatcatcggccaaaccatacgccaagtgcgtcgccgcgctaaatatctgtta
atcgataccgatgctggcaccagcatagtgcatttggggatgtcgggcagcttgcggatc
ctgccccatgacacgccagtggagaagcacgaccatatcgatcttgtcctcgccaatggc
cgaattctgcgatttaacgatcctagacgttttggcgcttggttatggtgccaattgcca
gaggaagcccatccgctactggaaaaactcgggccagaacctttgaccgacgcctttaac
gtcaatcagttagctgccgcactggcgggcaagaagaaggccatcaaactctgcctgatg
gacaaccatattgtggtgggtgtgggaaatatttacgccaacgaagcactgtttgccgca
ggaatacaccccgaggcggaggccggcaagatagatattgaacgcttaacggtactggtt
gccgaggtcaaacaaatcctcgcccacgccatcaaacagggcggtactacgcttaaagac
ttcaccaatgccgagggtaaacccggctatttcgcgcaaaagctgcatgtttacggccgc
ggcggcgaaacctgcactcagtgcggcaatctactcagcgaaatccgcctaggtcaacgc
accacagtattttgcggcatctgccagacgcgttaa

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