KEGG T01450: Sph21

Sphingobacterium sp. 21: Sph21_1108

Entry

Sph21_1108 CDS T01450

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

shg Sphingobacterium sp. 21

Pathway

shg03410	Base excision repair
shg03420	Nucleotide excision repair
shg03430	Mismatch repair
shg03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:shg03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:shg03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:shg03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:shg03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

326798529

NCBI-GeneID:

10346850

UniProt:

F4CD67

Position

1375215..1376813

AA seq 532 aa
MRAFNELFEEIDRTTSTNAKVEALVRYFRSAHNQDLLWCVYLLMGKSTGRFVKTAILRQA
AIQLSQLPAWLFEESYHVVGDLAETIALCLPPPLEPKAYTLNETMAFLHDLKNLSDEEME
AALSSRWMHTPNNHRFVFNKLITGNFRMGASKQLVIKALSITFDKPESEMAHRLMGNWHP
TTADVQQLLLTEMPKDERSFEPYPFYLAYQLDKDPESLGNVDEWFIERKYDGIRGQIIVR
NGSLYIWSRGEDLLTDKFPEFHPLADLLPNGTVIDGEILPFKDEKVLPFSVMQTRTGRKQ
LSKKILADAPLIMICYDLLEYDGEDIRARPLETRRNLLVTLLEKLPRDIPLLISGIIPCD
TWHDVARAREEARAYQCEGVMLKRKQSIYETGRRRGNWWKWKVEPYTIDGVLIYGQRGHG
RRANLYTDYTFAVWDNGELVPFAKAYSGLTDKEILEVDAWIKRHTIDKFGPVRSVTPTLV
FELAFEGISSSPRHKSGIALRFPRIVRWRKDKPAKEANTKADLLALLKQQKA

NT seq 1599 nt +upstreamnt +downstreamnt
atgagagcattcaatgagctattcgaagaaatagatcgaacaacctcaacgaacgcaaaa
gtggaggccctcgttcgttacttcaggtcggcgcacaaccaggatctattatggtgtgta
tacttgctaatgggtaaatcaaccggacgctttgttaaaacggccatacttcgccaagcg
gccatccaattatcgcaacttcccgcctggcttttcgaggaatcatatcatgtagtgggt
gatttggcagagacgattgcactgtgtttaccaccaccgcttgagccaaaggcttacaca
ttaaacgaaacgatggcttttttacacgatttgaagaatcttagcgacgaagagatggaa
gcggccctttcttccagatggatgcatacaccaaacaaccaccgctttgtttttaacaaa
ttgattaccggaaacttccggatgggtgcatccaaacaactagtcattaaagctttgtcg
ataacttttgataaaccggaaagcgaaatggcacatagactgatgggtaattggcaccct
actacggcggacgttcagcaacttcttctgacagaaatgccgaaggacgagcgcagtttt
gaaccttatcccttttatttagcttatcaattagataaagaccctgaaagtttaggaaat
gtggacgaatggtttattgagcggaaatacgatggcataagaggacagattattgttcgc
aacggcagtttatatatatggagtcgaggtgaagacttattgacggataaatttccggaa
tttcatcccttggctgatttactaccgaatggtaccgtgatagatggtgagatacttcct
tttaaagacgaaaaagtacttcctttttcggtgatgcaaacgcggaccggccgaaagcaa
ttaagcaaaaaaatactcgctgatgcgcctttaatcatgatctgttatgatctattggaa
tacgatggagaagatattcgcgcccggccattagaaacgcgacgcaatctgttagtgacg
ctcttggaaaagcttccccgggacatccctcttctgatttccggcatcattccttgcgat
acgtggcacgacgtcgctcgcgcacgtgaagaggcgagggcttatcaatgtgaaggagtt
atgcttaaaaggaagcaaagcatttatgaaacaggacgccgcagaggcaattggtggaaa
tggaaagttgagccttatacgattgacggcgttttaatatatggacaacgaggacatgga
cgacgggcaaatttatataccgattatacatttgccgtatgggataatggagagctggtc
ccctttgccaaggcctattcaggactgacagacaaagagatattggaagttgatgcttgg
ataaaacggcataccattgataaatttggccccgtgaggagtgtaacaccaacattggtt
tttgagctcgcctttgaaggaatcagttcgtctccccgccacaaatcgggtatagctttg
cgttttccgcgtatcgtccgttggcgaaaagataaaccggcaaaggaagcaaacacaaaa
gcggatttattagctttgctgaagcaacagaaggcttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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