KEGG   Shewanella halifaxensis: Shal_0140Help
Entry
Shal_0140         CDS       T00654                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
shl  Shewanella halifaxensis
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:shl00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Shal_0140
Enzymes [BR:shl01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Shal_0140
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Shal_0140
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(155936..156751)
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGVSPYLIDNQVTDLIVRNPSLRWPVPEIAKQIIGQTIRNVRRRGKYLL
IDTDAGTTIVHLGMSGSLRILPASTPVEKHDHIDLVLASGKALRFNDPRRFGAWLWCELP
EQAHPLLSKLGPEPLTDAFNAPYLLAALANKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPQAEAGKVDAERIEILVSEVKQILASAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGETCTQCGHLLSEIKLGQRATVFCSLCQKL
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgccggaactccctgaagttgaagtcaccaggcaaggtgtatcgccttaccttattgat
aatcaagttactgacttaatcgtccgtaatccgtcactaagatggcccgttcccgagatt
gctaagcagattatcggccaaacaattcgtaatgtacgtcgccgcggtaagtacctgctg
attgataccgacgcgggtaccaccatagtgcatctgggcatgtcgggtagcttacgcatt
ctgcccgcctctaccccagtggaaaagcatgaccatatcgatctggtgctcgctagcgga
aaagcactgcgctttaatgatccaagacgctttggggcatggctctggtgtgaactacct
gagcaagcgcatccgctactatctaagctgggccctgagccgctgacagatgcctttaac
gccccttacctactcgcagccttggccaataagaaaaaggcgataaagctgtgcttgatg
gacaatcatatcgtagtgggtgtcggtaatatttacgctaacgaggcgctgtttgcagca
ggcattcacccgcaagccgaagcgggtaaagtggatgccgagcgcattgaaattttagtc
agtgaagtaaaacagatcttggctagtgccattaaacaaggtggcaccaccttgaaggac
tttaccaatgcagacggtaaaccgggctacttcgcccagaagctacatgtctatggtcgt
ggcggcgagacctgcacccaatgtggccatctactgagtgagattaagcttggtcagcga
gcaacggtattttgtagtttgtgccaaaagctttaa

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