KEGG T00654: Shal

Shewanella halifaxensis: Shal_1855

Entry

Shal_1855 CDS T00654

Definition

exodeoxyribonuclease V subunit alpha

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

shl Shewanella halifaxensis

Pathway

shl03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:shl03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Helicase_RecD Viral_helicase1 AAA_11 AAA_22 DUF2075 UvrD-helicase AAA_16 AAA_25 AAA_28 PhoH UvrD_C ArgK T2SE TrwB_AAD_bind DUF1367 NTPase_1 AAA_17 ResIII AAA_29 Flavi_DEAD SRP54 AAA_5 KaiC

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2219255..2221228)

AA seq 657 aa
MITTTLPINELLKQWQNERLLTSLDRHFALEMTKQHHDSSPLFTLICALVSQHLSSQHTC
LPLKQIDLTNPFKEQSSQCQINLDLSQLEQALLAFDAIGTPEDEEPKPLIMDKGNLYLQR
YYHYEKEVAGALKRLAHSPQTSEQSDASIEQASELLSKLFPPTEQQYDWQKIATATAMTK
KLAVITGGPGTGKTTTVTKLLYLLCEGQELTIRLVAPTGKAAARLSESIKASKQRLANDL
SQAGVADLDKNIANIPEEAATLHRLLGVIPNSHQFRHHKDNPLRLDLLVIDEASMVDLPM
MHKVLSALPEHARLILLGDQDQLASVEAGAVLADICQGLKQVSKTTKQSRWHMRYSQSQA
ELLSQLTSTELSEFINPNPKIGDSLCMLMHSHRFKGDAGIGQLAAAVNHANIARIAQVWQ
TGYQELQWIEHGLVNTHSSAQTNTGLESLLAQAVQQYGVYLAQISQTQGDAEAIIDCFNQ
YRILCAMRAGEYGVEGINQGVTMALAAQGLINPEQEFYAGRPIIIQSNDYNLGLFNGDIG
LILPDNHSETGRLMAHFIQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSHVSLVLPI
RPSIAQQQLLSKELIYTAITRAKHHFTCLGSQRVFEHASTCLTQRASGLAQRLWREE

NT seq 1974 nt +upstreamnt +downstreamnt
atgataacaacgactctgccgattaatgaattgttgaaacagtggcaaaatgagcgtctg
ctcacctctcttgatcgccactttgcgttagagatgaccaagcagcatcatgattcatcg
ccactgtttacgcttatctgtgcccttgttagtcagcatctgtcgagccaacatacttgc
ttgccgctaaaacagatagatttaactaatccgtttaaagaacaaagcagtcaatgccag
attaacctagatctgagtcagctagagcaagcgctattagcattcgatgccatcggcacg
cctgaagatgaagagcctaagccacttattatggataaaggtaacctttatctacagcgg
tattaccactacgaaaaagaggtcgcaggcgcgctcaagcgtttagcccattcgccacaa
accagtgaacagagcgacgccagtattgagcaagcaagcgagttactgtccaaacttttt
cctccgacagagcagcaatatgactggcaaaaaatagccaccgccacggcaatgactaag
aagttagccgtcattactggcggcccgggtacaggtaaaacgactacggtgactaagtta
ctgtatttgttgtgcgaagggcaagagttaaccattcgactggtggcgccaacaggtaaa
gcggcagcgcgtttaagtgagtcgattaaggcctcaaagcagcggcttgctaatgatcta
agccaagcgggcgtcgccgatttagacaaaaatatagccaacattccagaagaagcggcc
accctgcaccgcttgttaggggttattcctaattcacaccagtttaggcaccataaagat
aacccgttaagactcgatctcttagtgatcgatgaagcctctatggtcgacttacctatg
atgcacaaggtgttatctgcgctacctgagcacgccagactcattttacttggcgatcag
gatcagctggcctcagtggaggctggcgctgtgctcgcggatatttgccaaggcttgaag
caagtctctaaaacaaccaagcaaagccgctggcatatgcgttattcgcaatcccaagcg
gagctactcagtcagctaaccagcactgagttatctgagtttatcaaccctaaccccaag
attggcgatagcctctgcatgttaatgcacagtcatcgtttcaaaggtgatgccggtatt
ggccagctagccgccgcggtcaatcacgctaatattgcgcgtattgcacaggtatggcag
acaggctatcaggagttgcagtggatagaacatggcttggttaacacccatagcagtgct
caaactaatactggactggaaagcttattggcccaagccgttcagcagtacggcgtttat
ttagcccagataagccaaacacaaggcgatgctgaggccattatcgactgctttaatcag
tatcgcattctatgtgcgatgcgagcgggtgaatacggcgtagaggggatcaaccaaggc
gtgacgatggctctcgccgcacaaggtctcattaatcccgagcaagagttttacgctggg
agaccgattatcatacagagcaacgattacaaccttgggctgtttaatggtgatataggg
cttattttacccgataatcacagcgaaacgggtcgcttaatggcgcactttatccaggcc
gacggtagcttgcttaaagtcttgcctgctagactgccaagccatgaaacctgttatgca
atgacggtacataaaagccaaggcagtgagtttagtcacgtctctttagtactgccgata
aggccaagtattgcccagcaacagttactgtctaaagagttgatttatactgccattact
cgagctaaacaccactttacttgcctgggaagccaaagagtatttgagcacgcaagtacc
tgcctaacccagcgtgcatcgggattagctcagcgattatggcgcgaggaataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SHL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (26)   
   Pfam (26)   
All databases (36)   

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