KEGG T00389: Shewmr7

Shewanella sp. MR-7: Shewmr7_3184

Entry

Shewmr7_3184 CDS T00389

Gene name

metH

Definition

B12-dependent methionine synthase (EC:2.1.1.13)

Orthology

K00548

5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]

Organism

shm Shewanella sp. MR-7

Pathway

shm00270	Cysteine and methionine metabolism
shm00450	Selenocompound metabolism
shm00670	One carbon pool by folate
shm01100	Metabolic pathways
shm01110	Biosynthesis of secondary metabolites
shm01230	Biosynthesis of amino acids

Module

shm_M00017

Methionine biosynthesis, apartate => homoserine => methionine

Class

Metabolism; Amino acid metabolism; Cysteine and methionine metabolism [PATH:shm00270]
Metabolism; Metabolism of other amino acids; Selenocompound metabolism [PATH:shm00450]
Metabolism; Metabolism of cofactors and vitamins; One carbon pool by folate [PATH:shm00670]

SSDB

Motif

Pfam:

S-methyl_trans Met_synt_B12 Pterin_bind B12-binding_2 B12-binding

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3759469..3763203

AA seq 1244 aa
MAISLHRASQTLADIRNQLSKRILILDGAMGTMIQGYKLEEADYRGERFKDWHTDVKGNN
DLLVLTQPHIIKQIHTDYLLAGADIIETNTFNATTIAMADYDMQSLSAEINREGARLARE
ACDEIEKATGKPRYVAGVLGPTNRTCSISPDVNDPGYRNIHFDELVTAYCESTRALIEGG
ADIIMVETIFDTLNAKAALFAIETVFDELFGANSPARLPVMISGTITDASGRTLTGQTTE
AFYNSLRHIKPLSIGLNCALGPKELRPYVEELSRIAECYVSAHPNAGLPNEFGGYDETPE
DMASVIQEWASEGMLNIIGGCCGSTPEHIKVIREAVEPFAPRVLPEIPVACRLSGLEPLT
IDAQTLFVNVGERTNVTGSAKFLKLIKEGKFEQALDVAREQVESGAQIIDINMDEGMLDG
VEVMHKFLNLIASEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEQ
ATLVKRYGAAAIIMAFDEQGQADTKARKVEICTRAYRVLVDKVGFPPEDIIFDPNIFAIA
TGIDEHDNYAVDFIEAIKEIKATLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIK
VGMDMGIVNAGQLAIYDDIDPELKDKVENVVLNLPCPVEGSNNTEQLLEIAEKFRGDGSS
AAKKEDLEWRSWPVNQRLAHALVKGITEFIDEDTEAARQLASRPLDVIEGPLMDGMNIVG
DLFGSGKMFLPQVVKSARVMKKAVAYLNPFIEQEKVEGQSNGRILMVTVKGDVHDIGKNI
VGVVLACNGFEVFDLGVMVSVERILEAVKEHNIDIIGMSGLITPSLDEMVHNVKTFHREG
LTIPAIIGGATCSKIHTAVKIAPHYPHGAIYIADASRAVPMVSKLVSNETRQATIDETYA
EYEEMRVKRLSQTKRKEIVSLEAARENRCQHDWANYTPFKPNVLGRQVFEDYPLTDLVDR
IDWTPFFRAWELHGHYPEILTDKVVGVEAQKLFADGQAMLKKIIDEKWLTAKGVIGLFPA
NTVGFDDIELYTDETRTEVEMTTHHLRMQLERVGNDNFCLADFVAPKDSGVADYMGGFAV
TAGHGIDEHIARFEANHDDYNAIMLKCLADRLAEAFAERMHERVRKEFWGYAADEQLDNE
ALIREKYKGIRPAPGYPACPDHTEKGLLWELLKPNETIDLNITESYAMFPTAAVSGWYFA
HPKSRYFGVTNIGRDQVEDYAKRKGMTVAETEKWLAPVLDYDPE

NT seq 3735 nt +upstreamnt +downstreamnt
atggcgatatctctccatcgagccagccaaacactggcagacattcgcaaccagttgtca
aagcgcattctgattttagacggcgccatgggcactatgatccaaggctacaagctggaa
gaagccgattaccgtggcgagcgtttcaaggattggcataccgacgttaagggcaataac
gatcttttagtgctcacgcagccgcacatcatcaaacaaattcacaccgactacctatta
gccggtgccgatattattgaaaccaacaccttcaacgccaccactatcgccatggccgac
tacgacatgcagtcgctgtccgccgaaattaaccgtgaaggcgcgcgcctcgcccgtgag
gcctgtgacgaaatcgaaaaagccacggggaaaccccgttatgttgccggtgtgttaggg
cccactaaccgcacttgttctatcagccccgatgttaacgatcccggatatcgcaatatc
cacttcgatgagttagtgaccgcttactgcgaatcgacccgcgccttaattgaaggcggc
gccgatatcattatggtcgagaccatcttcgataccttaaacgctaaggccgccttattt
gccatcgaaaccgtgttcgatgaactctttggggcaaattcaccagcacgtttgcccgtg
atgatctcaggcaccattaccgatgcctcgggccgaaccctgaccggacaaaccaccgaa
gctttttataactcccttcgccatatcaagcccttgtccatcggccttaactgcgccctc
ggccctaaggagctgcgcccctacgtcgaagaactgtcgcgcatcgccgaatgttatgtc
tcggcgcaccctaacgcgggtctaccaaacgagtttggcggttacgatgaaaccccagaa
gatatggcgagcgttatccaagaatgggccagtgaaggcatgctcaacattatcggcggc
tgctgtggtagcacgcccgagcatattaaggtcattcgcgaagccgttgagccgtttgcg
ccacgggtactacccgagatccccgtcgcctgccgtttatcgggtttggaaccgctcact
atcgacgcccaaaccctgtttgtgaacgtgggtgaacgtaccaacgttactggctcggcc
aagttcttaaagctgatcaaagaaggtaaattcgagcaggcgctcgatgtcgcccgtgaa
caggtagaaagcggcgcgcagatcatcgacatcaacatggatgaaggcatgctcgatggt
gtggaggtgatgcataagtttttaaatcttatcgcctctgagccggatatcagccgtgta
ccgattatgatcgactcctctaagtgggaggtgattgaagcgggcctcaaatgtattcaa
ggcaagggaatcgtcaactctatctccttgaaggaaggcgaggagaagtttatcgagcag
gcaaccctagttaaacgctacggcgcagcggccattattatggcgttcgacgagcaaggt
caggccgacactaaggcgcgtaaagtcgagatctgtacccgcgcctaccgcgtactggtc
gataaggtcggctttccgcccgaagacattatcttcgacccgaatatcttcgccatcgcc
acgggtatcgatgagcacgataactatgccgtcgattttattgaagccattaaagagatt
aaggccaccctgccccacgcgatgatttccggcggggtgtcgaacgtgtcgttctccttc
cgcggtaacaaccctgtgcgtgaggccattcacgcggtgttcctgtaccacgcgattaaa
gtcggcatggacatgggtatcgtcaacgcgggccaattagcgatttacgatgatatcgac
cccgaacttaaggataaggtcgagaacgtcgtgctcaacctgccttgtcctgttgaaggc
tcaaacaataccgagcaattgcttgagattgctgaaaaattccgtggcgatggctcaagt
gccgccaagaaagaagacttagaatggcgctcatggccagttaatcaacgtctcgcccat
gcgctggtcaaaggcatcaccgaatttatcgacgaagatactgaagcggctcgtcagctc
gcctcccgtccgctggatgtgattgaaggcccgttgatggacggtatgaatatcgtcggc
gacctgtttggctcgggcaaaatgttcctgccacaggtggtgaagtcggcgcgggtgatg
aaaaaggccgtagcctacctcaacccctttatcgagcaagagaaggtcgaaggccaatct
aacggcagaattttgatggtgacggttaagggcgatgtgcacgatatcggcaagaatatt
gtcggcgtggtgctcgcctgtaacggctttgaggtattcgatttaggcgtgatggtgtcg
gtggagcgcattctcgaagcagtgaaagagcacaatatcgacattatcggcatgtctggg
cttatcaccccaagcctcgatgagatggtgcacaatgtgaaaaccttccaccgtgaaggc
ctcaccattccggcgattatcggcggcgcgacctgctcgaaaatccataccgcggtgaag
attgcgccccattatccccatggcgcgatttacattgccgacgcctcgcgcgccgtgcct
atggtcagcaagctggtgagcaatgaaactcgccaagccactatcgatgagacctacgcc
gaatacgaagagatgcgcgttaagcgtttatcgcaaaccaagcgtaaggaaattgtctcg
ctggaagccgcccgcgaaaaccgctgccagcacgactgggcaaactacaccccgttcaag
cccaatgtgctgggtcgccaagtatttgaagactatccattaaccgacttagtcgaccgt
atcgactggacgccgttcttccgcgcttgggagctacacggccattaccctgagatctta
accgacaaggtagtgggggttgaggcgcagaaactgttcgccgatggtcaggccatgctt
aagaaaatcatcgatgaaaaatggcttaccgccaagggcgtgattgggctattccccgcc
aatactgtcggcttcgatgatattgagctctataccgacgagactcgcaccgaagtcgaa
atgactacccatcacctgcggatgcagcttgagcgtgtgggtaacgataacttctgtctg
gccgactttgtggcgccaaaggacagcggcgttgccgactatatgggcggttttgccgtg
accgcaggccatggtatcgatgagcatatcgcccgctttgaggccaaccacgatgactac
aacgccattatgctcaagtgcttagccgaccgtttagccgaagcctttgccgagcggatg
cacgagcgcgtgcgtaaggaattctggggttatgccgccgatgagcagctcgataacgaa
gccttaattcgtgagaaatacaaagggatccgccccgcaccgggttaccccgcctgcccg
gatcacaccgaaaaaggcctgctgtgggaactgttaaagccgaatgaaaccatcgactta
aacattaccgaaagctacgccatgttccccaccgcagcggtatcgggctggtactttgcc
cacccgaaatcccgctactttggcgtgaccaatattggtcgcgatcaggtagaggattac
gctaagcgtaaggggatgactgttgcagagacggagaagtggctagcgccagtacttgac
tatgatcccgagtga

All links

Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SHM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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