KEGG   Shewanella sp. MR-7: Shewmr7_3614
Entry
Shewmr7_3614      CDS       T00389                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
Organism
shm  Shewanella sp. MR-7
Pathway
shm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Shewmr7_3614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shm03019]
    Shewmr7_3614
Messenger RNA biogenesis [BR:shm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Shewmr7_3614
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_22 CCDC138_C
Other DBs
NCBI-ProteinID: ABI44594
UniProt: Q0HQL1
Position
complement(4294378..4295697)
AA seq 439 aa
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQ
GAHRSGGRPPRHDRTRRQP
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgagccaaacacatttatctaatcaaaaatttgccgaccttcctctacatccagaggta
aaacaggcccttgccgaaaacggcttcgaattttgtacgccaattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgccggccaagctcaaacgggcactggtaagaca
atggcgtttttggttgccacatttaaccatttattatcgacgccaattcctgaaaaccgt
cagcttaatcagccgcgcgccatcattatggccccaactcgcgagctggcgattcaaatt
gcaaaagacgcgattctacttgccaagcatactcacttaaaggtggggattgtttacggt
ggcgagagttatgatgttcagcgtaaagtactcgatcaaggtgttgatatcttaatcggg
acgactggacgtattattgactatgtgcgtcagggcattattagcttaaatgcgatccaa
gccgtagtgttagacgaagccgatcgcatgttcgacctcggttttatcaaggacattcgt
ttcctcttccgacgtatgcccaatgccgatcagcgtctgaacatgctgttctcggcgaca
ctttcgatgaaggtgcaggaacttgcctatgatcatatgaatgatcctgtgaaagtcgaa
attgccccagaagaaaaaacctccaagaacatcaaagaagaaattttctatccctctcaa
gaagataaaattcgtttactgctgacattgattgaagaagattggcccgagaaggccatt
gttttttcaaacactaagcacagctgtgagaacctatggtcttggcttgaaggggatgga
catcgcgttggtttgctgacgggtgatgtaccgcagaagaaacgtattcgtatcctggag
caatttactcaaggccaactagatattctggtcgcgaccgatgttgctgcacgtggacta
catatctccgatgtttctcatgtctacaattatgatttacctgatgattgtgaggactat
gttcatcgtatcggtcgtacgggccgtgcgggtaacaaaggcgtatctgttagtttcgcc
tgtgaagaatacgcactgaatctgcctgcgattgaaagctatatcaatcactccattcct
gtgagtaattatgaccgtgatgcgctgctggatgatattccaccgccggttaaaattcat
cgcaaacaccccgctggggcgcgcaatttacgtgagcgctctggagctggtcgacctcaa
ggtgcccatcgcagtggtggccgtccacctcgtcatgacaggacgcgtagacagccgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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