KEGG   Shewanella sp. MR-7: Shewmr7_3974Help
Entry
Shewmr7_3974      CDS       T00389                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
shm  Shewanella sp. MR-7
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:shm00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Shewmr7_3974
Enzymes [BR:shm01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Shewmr7_3974
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Shewmr7_3974
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
4718263..4719078
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGIAPHLVEQTVVDLIVRNASLRWPVPELAKQIIGQTIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCQLP
EEAHPLLEKLGPEPLTDAFNVNQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTQCGNLLSEIRLGQRTTVFCGICQTR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgccggaattaccagaagtcgaagtcacccgtcagggcattgccccacatcttgtcgaa
caaaccgtggttgacctcattgtccgtaatgcctcattgcgttggcccgttcccgaactt
gccaaacagatcatcggccaaaccatacgccaagtacgccgccgcgcaaaatacctgtta
atcgataccgatgccggcaccagcatagtgcatttagggatgtcgggcagcttgcggatc
ctcccccatgacacgccagtggagaagcacgaccatatcgatctcgtcctcgccaacggc
cgtattctgcgctttaacgatccgaggcgtttcggtgcttggttatggtgccaactgccg
gaggaagcccatccgctactggaaaaactcgggccagaacctttaaccgatgcctttaac
gtcaatcagttagctgccgcactggcgggcaagaagaaggccatcaaactctgcctgatg
gataaccatattgtggtgggtgtgggaaatatttacgccaacgaagcactgtttgccgca
gggatacatcccgaggcagaagcaggcaagatagatattgaacgcttaacggtactggtt
gccgaggtcaaacaaatcctcgcccacgccataaagcagggcggcactacgcttaaggac
ttcaccaatgccgagggtaaacctggctatttcgcacaaaaactgcatgtttacggccgc
ggcggcgaaacttgcactcagtgcggcaatctactcagcgaaatccgcctgggtcaacgc
accacagtattttgcggcatctgccagacgcgttaa

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