KEGG   Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_2667
Entry
SHJGH_2667        CDS       T02531                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sho00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SHJGH_2667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sho03021]
    SHJGH_2667
   03400 DNA repair and recombination proteins [BR:sho03400]
    SHJGH_2667
Enzymes [BR:sho01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SHJGH_2667
Transcription machinery [BR:sho03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SHJGH_2667
DNA repair and recombination proteins [BR:sho03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SHJGH_2667
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AGF62333
Position
complement(3131608..3131880)
AA seq 90 aa
MSSSITAPEGIINPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVD
THVHEKPLSIALREINAGLLTSEAVEGPAQ
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgtcctcttccatcaccgcgcccgagggcatcatcaacccgccgatcgacgagcttctt
gaggcgaccgactcgaagtacagcctcgtgatctacgcggccaagcgtgcccgccagatc
aacgcgtactactcccagctcggtgagggcctcctggagtacgtggggccgctcgtcgac
acccacgtacacgagaagccgctgtcgatcgccctgcgcgagatcaacgcaggtctgctg
acctccgaggccgtcgagggcccggcgcagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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