KEGG   Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_3885
Entry
SHJGH_3885        CDS       T02531                                 
Name
(GenBank) endonuclease VIII and DNA N-glycosylase with an AP lyase activity
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SHJGH_3885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sho03400]
    SHJGH_3885
Enzymes [BR:sho01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SHJGH_3885
DNA repair and recombination proteins [BR:sho03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SHJGH_3885
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS NFACT_N
Other DBs
NCBI-ProteinID: AGF63550
Position
complement(4436977..4437786)
AA seq 269 aa
MPEGHTIHRLAQDYAERFAGRTVRVTSPQGKFSDAAALLDRTELTATEAHGKHLFLGFRD
GDWVHIHLGLFGKVGFGDAPAPPPADTVRLRLADDTSYVDLRGPTTCALITDAEKRAVHD
RLGPDPLRADADPGTAYRRISRSRTTIAALLMDQKIVAGVGNVYRAEVLFRHGIDPYRAG
RDITPAEWDAIWTDLAALMREGVRNNRIDTVRPEHTPEAMGRPPRVDDHGGEVYVYRRAN
LPCHICGGGIRTADLAARNLFWCPTCQKR
NT seq 810 nt   +upstreamnt  +downstreamnt
gtgccagaggggcacacgatccaccggctggcccaggactacgccgagcgcttcgcggga
cggaccgtccgcgtcaccagcccccagggcaagttctccgacgccgccgcccttctggac
cgtaccgagctgaccgccacggaagcccacggcaagcacctcttcctgggcttccgggac
ggcgactgggtccacatccacctcggcctcttcggcaaggtcggcttcggggacgccccg
gcgcccccgccggccgacaccgtccggctccggctcgccgacgacacgtcgtacgtcgat
ctgcgcggccccaccacctgcgccctgatcacggacgccgagaagcgggcggtccacgac
cggctcggccccgacccgctacgcgcggacgccgacccgggcacggcctaccgcaggatc
tcccgcagccgtacgacgatcgccgccctgctcatggaccagaagatcgtggccggcgtc
ggcaacgtctaccgcgccgaggtgctgttccggcacggcatcgacccctaccgcgcgggc
cgggacatcaccccggccgagtgggacgcgatctggactgacctggccgcgctgatgcgg
gagggcgtccggaacaaccggatcgacaccgtccgcccggagcacacccccgaggccatg
ggccgcccgccccgcgtcgacgaccacggcggcgaggtgtacgtctaccgccgggcgaac
ctgccctgccacatctgcggcggcggcatccgcaccgccgacctcgccgcccgcaacctc
ttctggtgcccgacctgccagaaacgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system