KEGG   Stereum hirsutum: STEHIDRAFT_157001
Entry
STEHIDRAFT_157001 CDS       T03127                                 
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
shs  Stereum hirsutum
Pathway
shs03013  Nucleocytoplasmic transport
shs03015  mRNA surveillance pathway
shs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    STEHIDRAFT_157001
  09122 Translation
   03013 Nucleocytoplasmic transport
    STEHIDRAFT_157001
   03015 mRNA surveillance pathway
    STEHIDRAFT_157001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shs03019]
    STEHIDRAFT_157001
   03041 Spliceosome [BR:shs03041]
    STEHIDRAFT_157001
Enzymes [BR:shs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     STEHIDRAFT_157001
Messenger RNA biogenesis [BR:shs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     STEHIDRAFT_157001
Spliceosome [BR:shs03041]
 Complex C
  Other components
   EJC/TREX
    STEHIDRAFT_157001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    STEHIDRAFT_157001
SSDB
Motif
Pfam: Helicase_C
Other DBs
NCBI-GeneID: 18801084
NCBI-ProteinID: XP_007304346
JGI: Stehi1_157001
Position
Unknown
AA seq 187 aa
MLEIFVDDETKLTLHGLQQHFVKLEEVGKNRKLNELLDTLEFNQAVIFVKSVARAIELDK
LLVSCNFPSISIHSGLAQEERISRYQAFKAFEKRIVVATDIFGRGIDVERSIDFERVNIV
VNYDCPPDADSYLHRVGRAGRFGTKGLAITFQSSEADQQVMATIQSRFEVAIPELPEHID
PASYMTS
NT seq 564 nt   +upstreamnt  +downstreamnt
atgttggagattttcgtcgatgatgagacgaagttgacgctgcacggtctgcagcaacac
ttcgtcaagttggaggaagtcgggaagaacaggaaattgaacgagctccttgacacgctt
gagttcaaccaggccgtcatcttcgtgaaatctgttgcgagggcgatcgagttggacaag
ctgctcgtttcgtgcaattttcccagtatcagtattcactccggcctcgcacaagaggag
cgtataagccgctaccaagcgttcaaggcgtttgagaagcgtatcgttgtcgccaccgat
atttttgggcgtggcatcgatgttgagcgtagcatcgattttgagcgtgtcaacatcgtc
gtcaattacgactgccccccggatgcagacagctatcttcatcgtgtgggtcgtgctgga
cgatttggaacgaagggtctcgccatcactttccagtcatcggaggcggaccagcaggtg
atggcgaccatccagtctcggttcgaagttgcgatccctgagcttcccgagcacatcgat
cctgctagctacatgacttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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