KEGG   Staphylococcus hyicus: SHYC_10920
Entry
SHYC_10920        CDS       T03578                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
shu  Staphylococcus hyicus
Pathway
shu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:shu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SHYC_10920 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shu03021]
    SHYC_10920 (rpoC)
   03400 DNA repair and recombination proteins [BR:shu03400]
    SHYC_10920 (rpoC)
Enzymes [BR:shu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SHYC_10920 (rpoC)
Transcription machinery [BR:shu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SHYC_10920 (rpoC)
DNA repair and recombination proteins [BR:shu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SHYC_10920 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AJC96910
UniProt: A0A0A8HT94
Position
complement(2240182..2243799)
AA seq 1205 aa
MIDVNKFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMICDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFREYYDKFPGQFTAKMGAEGIKDLLE
EINLDEELKMLRDELESATGQRLTRAIKRLEVVESFRNSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPNLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKTKIERTEDEVWDVLEDVITEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGLLFNDANEVIKAYANGYVHLHTRIGVQ
AASFNNPTFTEEQNRKILTTSVGKVIFNEIIPDSFAYINEPTATNLEKNTPDKYFVDASD
LGEGGLAEYFENTELVPPFNKKFLGNIIAEVFNRFSITDTSMMLDLMKDLGFKYSSKAGI
TVGVADIVVLPDKKEILDESEKLVERVQKQFNRGLLTEEERYNAVIEIWTNAKDQIQEEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYAKETIRHPETDKVIIRPDELITPDIAKEITDAGIEEMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGTIDNITIGKDRQQEIVVKGKNETRSYLAPGTSRLKVEIGQ
AVERGEVLTEGSIEPKNFLAIAGLTATEAYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHHFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMKRYSQVDIEKEKSTIDAQE
HIVTE
NT seq 3618 nt   +upstreamnt  +downstreamnt
ttgattgatgtaaataaatttcattacatgaaaataggactcgcttcacctgaaaaaatc
cgttcttggtcatacggtgaggttaaaaagccagaaacaattaactatcgtactttaaaa
ccagaaaaagacggtctattctgtgaacgtattttcggaccaacaaaagactgggaatgt
agttgtggaaagtacaagcgtgtacgttataaagggatgatttgtgaccgttgtggcgtt
gaagttacaaaatcaaaagtacgtcgtgaacgtatgggtcacatcgaacttgcagcacct
gtatcacacatttggtatttcaaaggaattccaagtcgtatgggcttattgctagatatg
tcaccacgtgccttagaagaagtcatttattttgcttcttacgttgtggtagatccaggt
ccaactggtttagaaaagaaaacattactctcagaagctgaattccgtgagtactatgac
aaattccctggtcaattcactgcaaaaatgggtgctgaagggattaaagatttattagaa
gaaatcaacttagatgaagaattaaaaatgttacgtgatgaacttgaatctgctacaggt
caacgtttaacacgtgcgattaaacgtttagaagttgtggaatcattccgtaactctgga
aacaatccagcttggatgattttagacgtacttccaattattccaccagaaattcgtcca
atggtgcaattagatggtggacgttttgcgacaagtgatttaaacgatttatatcgtcgt
gtcattaaccgtaacaatcgtttaaaacgtttattagatcttggtgcacctggcatcatc
gttcaaaacgaaaaacgtatgttacaagaagctgtcgatgcattaatcgataacggtcgc
cgtggtcgtcctgttacaggtcctggtaaccgtccattaaaatcactctcacatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattctggt
cgttcggttatcgcagtaggtccaaacttaaaaatgtaccaatgtggtttaccgaaagaa
atggcgttagaattattcaaacctttcgtaatgaaagaattagttcaacgtgaaatcgct
acaaacattaaaaatgcgaaaacaaaaattgaacgtacggaagatgaagtttgggacgtt
ttagaagatgttatcactgaacacccagtactgcttaaccgtgcccctacacttcacaga
ttaggtatccaagcgttcgaaccaacgcttgttgaaggacgcgcaatccgtctacatcca
cttgtaacaacagcttacaacgcggactttgacggtgaccaaatggccgttcacgtacct
ttatcaaaagaagcacaagcagaagcgcgtatgttaatgcttgcggcgcaaaacatcttg
aaccctaaagacggtaaaccagttgtaacaccatctcaggatatggtacttggtaactac
taccttactttagaacgtaaagatgcggtaaatacaggtttattatttaacgatgccaat
gaagtgatcaaagcgtatgcaaatggctatgtacatcttcatacacgtattggtgttcaa
gcagcatcattcaataatcctacatttactgaagaacaaaaccgtaagatcttaacgacg
tcagtaggtaaagtgattttcaatgaaatcattccagattcatttgcatatatcaatgaa
ccaactgcaacgaacttagagaagaacacaccagacaaatactttgttgatgcgtctgat
cttggtgaaggcggtttggcggaatactttgaaaacactgaacttgtaccgccattcaac
aaaaaattcttaggtaacatcattgcagaagtgttcaatcgcttcagcattacagataca
tctatgatgcttgacttaatgaaagacttaggatttaagtattcttcaaaagccggtatt
actgtaggtgttgctgacatcgtggtattaccagataagaaagaaattcttgatgaatca
gaaaaacttgttgaacgcgtacaaaaacaatttaaccgtggtttattaactgaagaagag
cgctataatgcggttatcgaaatttggacgaatgcaaaagaccaaattcaagaagagtta
atgcaatcacttgaaaaaacaaacccaatctttatgatgagtgactctggtgcccgtggt
aacgcatctaactttacgcaacttgcaggtatgcgtggattaatggccgcaccatctggt
aaaatcatcgaacttccaatcacatcatcattccgtgaaggtttaacagtattagaatac
tttatctctacgcatggtgcgcgtaaaggtcttgccgatacagcccttaaaacagcggac
tcaggttaccttactcgtcgtcttgttgacgtggcacaagatgttatcgtgcgtgaagaa
gactgtggcactgaccgtggtttactcgtttcagacatcaaagaaggtactgaaatgatc
gaaccattcatcgagcgtattgaaggtcgttatgctaaagaaacgattcgtcaccctgag
actgataaagttattatccgtccagacgaattaattacaccagacattgcaaaagaaatt
acagatgcgggcattgaagaaatgtatatccgttcagcatttacatgtaatacacgtcac
ggtgtatgtgaaaaatgttatggtaaaaacttagcaactggtgaaaaagttgaagtgggt
gaagcagtcggcactatcgctgcacaatctatcggtgaacctggtacacagttaacaatg
cgtacattccatacaggtggggtagccggtagcgatatcacgcaaggtttaccacgtatc
caagaaatctttgaagcacgtaatccgaaaggtcaagccgtgattactgaaattgaaggt
actattgataacattacaatcggtaaagatagacaacaagaaatcgtggttaaaggtaag
aacgaaacacgttcataccttgcacctggtacgtcacgcttgaaagttgaaatcggtcaa
gccgttgaacgtggtgaagtattaacagaaggttctatcgagccgaagaatttcttagca
attgcaggtcttactgcaacagaagcctacttgcttaaagaggttcaaaaagtttaccgt
atgcaaggggtagaaatcgacgacaaacacgttgaagttatggttcgtcaaatgttacgt
aaagttcgtattatcgaagctggtgacacgaaattattaccaggttcattagtggacatt
caccactttacagatgcgaaccgtgaagcatttaaagaacgtaaacgcccagctactgct
aaaccagtacttttaggtatcacaaaagcatcacttgaaacagaaagtttcttatctgca
gcatccttccaagaaacgacacgtgtacttactgacgctgcgattaaaggtaaacgtgat
gacttacttggccttaaagaaaacgttattatcggtaagctgattccagcgggtacaggt
atgaaacgttacagccaagtagatatcgaaaaagaaaaatcaacaattgacgcacaagaa
cacattgtgacggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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