KEGG T02063: SHJG

Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6438

Entry

SHJG_6438         CDS       T02063

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

shy Streptomyces hygroscopicus subsp. jinggangensis 5008

Pathway

shy03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:shy00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SHJG_6438
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shy03021]
    SHJG_6438
   03019 Messenger RNA biogenesis [BR:shy03019]
    SHJG_6438
Transcription machinery [BR:shy03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SHJG_6438
Messenger RNA biogenesis [BR:shy03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SHJG_6438

SSDB

Motif

Pfam:

Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT AAA VAD1-2 ResIII Spore_III_AA AAA_22

Other DBs

NCBI-ProteinID:

AEY91705

Position

7328633..7330675

AA seq 680 aa
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGGAPAAKADTATETKPKRRATSKARTGESADNGESTAKKAEA
KTEAPAEKAVAQQQIEIPGQPASDDAPAERRRRRATAEAGSPAAGGAETVAVEAKGESRA
ETPAQQQSQPQGEARGDADGDGRGRRDRRERGRDRDRRNKGDDQQGQGGGRQDRQDRQDR
QDRQDRQQQGQQQGGGRQDRNTGPQDDDDFEGGRRGRRGRYRDRRGRRGRDEIAEPQLAE
DDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEG
ERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSP
IGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEV
ISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSG
GVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDR
KLADKRIFPAVDVDASGTRKEEILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTK
SNVEFLMQIQKTTPAPGNGD

NT seq 2043 nt +upstreamnt +downstreamnt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctt
gagggcatggtgctggccgagctgcagcaggttgcctcgggcctcgggatcaggggcacc
gcacggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgccgggggt
gcccccgctgccaaggccgacaccgccaccgagaccaagccgaagcgccgggccacctcc
aaggcccgcaccggcgagtccgccgacaacggcgagagcacggcgaagaaggcggaggcc
aagaccgaggcccccgccgagaaggccgtggcccagcagcagatcgagatccccggccag
ccggcctccgacgacgccccggccgagcgccgtcgccgtcgcgccaccgccgaggcgggc
agcccggccgcaggcggcgccgagaccgtcgccgtcgaggccaagggcgagtccagggcc
gagacgcccgcgcagcagcagtcgcagccgcagggcgaggccaggggcgacgccgacggc
gatggccgtggccgccgggaccgccgcgagcgcggccgggaccgcgaccgccgcaacaag
ggcgacgaccagcagggccagggcggcggtcgccaggaccggcaggaccggcaggaccgg
caggaccgccaggaccggcagcagcagggccagcagcagggcggcggccgtcaggaccgc
aacaccggtccgcaggacgacgacgacttcgagggcggtcgtcgcggccgtcgaggccgc
taccgcgaccgccgtggccgccgtggccgtgacgagatcgccgagccgcagctcgccgag
gacgacgtcctgatcccggtcgcgggcatcctggacatcctcgacaactacgccttcatc
cggacctccggctacctgcccggcccgaacgacgtgtacgtctccctcgcccaggtccgc
aagaacggcctgcgcaagggcgaccacgtcaccggtgccgtccgccagccgaaggagggc
gagcgccgcgagaagttcaacgcgctggtccgcctggactccgtcaacggcatggcgccc
gaacacggccgtggccgcccggagttcaacaagctgaccccgctctacccgcaggaccgg
ctccgcctggagaccgacccgggtgtgctcaccacccgcatcatcgacctggtctcgccg
atcggcaagggccagcgcggtctgatcgtggccccgccgaagaccggtaagaccatgatc
atgcaggcgatcgccaacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtc
ctcgtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggcgaggtc
atctcctcgaccttcgaccgtccggccgaggaccacacgaccgtcgccgagctggccatc
gagcgggccaagcgactggtggagctgggccacgacgtggtcgtgctgctcgactcgatc
acgcgtctgggccgcgcctacaacctggcggcgcccgcctccggccgcatcctgtccggt
ggtgtcgactcgaccgcgctctacccgccgaagcggttcttcggcgcggcgcgcaacatc
gaggacggcggctcgctgaccatcctggccacggctctcgtggacaccgggtcccgcatg
gacgaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccgg
aagctcgccgacaagcgcatcttcccggcggtggacgtcgacgcgtccggcacccgtaag
gaagagatcctgctcggcgccgaggagctgggcatcgtctggaagctgcgccgggtgctg
cacgcgctggaccagcagcaggcgatcgagctgctcctcgacaagatgaagcagaccaag
tcgaacgtcgagttcctgatgcagatccagaagacgacgccggcgcccggcaacggcgac
tga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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