KEGG T02063: SHJG

Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_7610

Entry

SHJG_7610 CDS T02063

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

shy Streptomyces hygroscopicus subsp. jinggangensis 5008

Pathway

shy03410	Base excision repair
shy03420	Nucleotide excision repair
shy03430	Mismatch repair
shy03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:shy03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:shy03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:shy03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:shy03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

386843692

NCBI-GeneID:

12811753

UniProt:

H2JQM3

Position

complement(8663241..8664317)

AA seq 358 aa
MDLPVMPPVKPMLAKSVAKIPPGMHYEAKWDGFRSIVFRDGAEVELGSRTGKPLTRYFPE
LVEALKERLPERCVLDGEIVIARGGRLDFDALTERIHPAASRVRMLAEKTPASFVAFDVL
ALDDHALLDVPLTDRRALLDRALAGATPPVHVAPSTTDIEVARQWFEQFEGAGLDGVVAK
PLTLRYLQDERAMFKIKHERTADVVVAGYRFHKSGPVVGSLLLGLYDEQGRLQHVGVSAA
FSMKKRAELVEELEPLRMDDVSGHPWAAWTDETAHETARLPGAPSRWSGKKDLSWVPLRP
DRVAEVAYDHMENGQRFRHTARFRRWRPDRTPESCTYAQLQEPVRYDLAEILGEKDGG

NT seq 1077 nt +upstreamnt +downstreamnt
atggatctgcccgtcatgccgcccgtgaagccgatgctcgccaagtcggtggcgaagatc
ccgccggggatgcactacgaggccaagtgggacggcttccggtcgatcgtgttccgggac
ggggccgaggtcgaactgggcagccgcaccggaaagccgctgaccaggtacttccccgag
ctggtcgaggcgctgaaggagcggctgcccgagcggtgcgtgctggacggggagatcgtc
atcgcgcggggcggccggctggacttcgacgcgctgaccgagcggatccacccggcggcc
tcccgggtacggatgctggcggagaagaccccggcctccttcgtcgccttcgacgtgctc
gccctggacgaccacgccctgctcgacgtgccgctcaccgaccgccgcgccctgctggac
cgggccctggccggggcgaccccgccggtgcacgtggcgccgtcgacgaccgacatcgag
gtggcccggcagtggttcgagcagttcgaaggcgccggtctcgacggggtcgtcgccaag
ccgctcaccttgcgctacctccaggacgagcgggccatgttcaagatcaagcacgagcgc
acggcggacgtcgtcgtcgccgggtaccgcttccacaaaagcggcccggtggtgggctcg
ctgctgctggggctgtacgacgagcagggccggctccagcacgtgggcgtgtcggccgcg
ttctccatgaagaagcgcgccgagctggtcgaggagctggagccgctgcgcatggacgac
gtctccgggcacccgtgggccgcctggacggacgagaccgcgcacgagacggcccggctg
ccgggcgcgccgagccgctggtcgggcaagaaggacctgtcctgggtgccgctgcggccg
gaccgggtggccgaggtggcgtacgaccacatggagaacggccagcggttccggcacacg
gcccgcttccgccgctggcgcccggaccgcacaccggagagctgcacgtacgcccagctc
caggagccggtccggtacgacctcgcggagatcctcggcgagaaggacggcggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system