KEGG S.pomeroyi: SPO0670

Silicibacter pomeroyi: SPO0670

Entry

SPO0670 CDS S.pomeroyi

Definition DNA polymerase III, alpha subunit, putative

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway sil00230 Purine metabolism
sil00240 Pyrimidine metabolism
sil01100 Metabolic pathways
sil03030 DNA replication
sil03430 Mismatch repair
sil03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:sil00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:sil00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:sil03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:sil03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:sil03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha tRNA_anti PHP

Other DBs NCBI-GI: 56695575
NCBI-GeneID: 3195523
UniProt: Q5LVN0

Position complement(696285..699590)

AA seq 1101 aa
MTYAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRRE
ADEAIRIRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRDR
AAYQRLTRLLTLGKRRAEKGDCHLDLADLLAGCTGMILIALPQGRLDGALPHLQQVQRRF
PGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRANRRQLADVLTCMREH
ITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCSFCLSELSYEYPDEV
AEGETPQARLERLTAEGIVRRYPGGAPQRVHELVAKELKLVAELGFPAYFLTVHDIVQFA
RSQGILCQGRGSAANSILCYLLGITDVSPDQIAMVFERFISKYRGEPPDIDVDFEHERRE
EVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGKVMGLSQDVTASLSGQIWGQSNGGAD
PERMRELGLDPEDRRLALTIRLIGEIIGFPRHLSQHVGGFVITRGRLDELAPIENAAMED
RTLIEWDKDDIDTLGILKVDVLGLGMLTCIRKAFDLMREHEQRHLSIDTVPQEDAATYDM
LCAADAVGVFQVESRAQMNFLPRMRPRTFYDLVIEVAIVRPGPIQGGMVQPYIRRRQGLE
KAEPFGPELAAVTARTLGVPLFQEQALQIAVVGAGYTAEEADHLRRSLASFRRMGTIGAH
RDTFIAGMRRNGYSQEVAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFA
CALLNAQPMGFYAPAQIVRDARDHQVELRPICVNASDWDNRLERRADGALALRLGFRQIK
GFREEDAAWIVAARGNGYPDPQALWLRAGVTPAVLERLAEADAFADMGIGRRDALWQVRA
IRGQAPLPLFNDPLDGEIIHEPQVTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIPG
LTPHDKLASVAAHRVSVCGLVITRQRPGTASGVIFLTLEDETGVSNVVVWPKIYEQFRRI
VMGGRLLRVTGTLQREGIVVHLIAQRIEDLSPRLADLGHPMDSAVGQTTPQTDSAPRPRP
QPRAMHPREQAKRLFPSRDFH

NT seq 3306 nt +upstreamnt +downstreamnt
atgacctatgccgagctttgcgtcaccaccaatttcacctttctcaccggcgcctcgcac
cccgaggagatgatcacccgcgccgccgagctgggcctgcatgccatcgccatcaccgac
cgcaactcgctggccggggtggtgcgggcctatgccgcgctaaaggagttgcggcgcgag
gcggacgaggccatccgcatccgctcgcagcaccggatcgattcctgctcgcgtcaggag
gtcgggcatccgcagccgatcgcccggcccgaggcgccgcgcctgccccggctgatcacc
ggctgccgcctggtgctgcgcgacagcccgctgcactggatcgccctgccccgcgaccgc
gccgcctatcagcggctgacccggctgctgacgctgggcaaacggcgggcggaaaagggc
gattgccatctcgatctggccgacctgctggcgggctgcaccggcatgatcctgatcgcg
ctgccgcaggggcggctcgacggggccctgccccatcttcagcaagtgcagcgccgcttt
cccggtcacgtgtttctgggcgcggcaccgcgctatgacgggtccgatcaggcctggctg
gccgcctgcgcccggctggccctgcgcagctcggccccgatggtggcggtgggcgatgcg
ctgatgcatcgcgccaatcgccgccagctggccgatgtgctgacctgcatgcgcgaacat
atcaccatcgaccggatcggcacccgcgccctgcccaatgccgaacgccgcctcaagggc
catgccgacatggcccggctgttccgcgaccaccccgccgcgctgcgccgcacgctggac
atcgccgcccggtgcagtttctgcctgagcgagctgagctatgaatatcccgacgaggtt
gccgagggcgaaaccccgcaggcccggttggaacggctgaccgccgagggaatcgtgcgc
cgctatccaggcggcgcgccccagcgcgtgcatgagctggtggccaaggagctcaagctg
gtcgccgaactgggttttcccgcctatttcctgacggtgcacgacattgtccagttcgcc
cgttcgcagggcatcctctgccaggggcgcggctcggcggcgaactcgatcctgtgctat
ctgctgggcatcaccgatgtctcgcccgaccagatcgccatggtcttcgagcgcttcatc
tcgaaataccggggcgagccgccggatatcgacgtcgatttcgaacatgagcggcgcgaa
gaggtgatccagtggatttaccagagatacggccgccaccgcgccggtctctgcgccacg
gtgatccatttccgctcgcgcgccgccatccgcgaggtgggcaaggtcatgggcctcagc
caggacgtgaccgccagcctctcgggccagatctgggggcagtccaacggcggcgccgac
cccgagcggatgcgcgagctgggccttgaccccgaggaccggcggctggccctgaccatc
cgcctgatcggcgagatcatcggctttccccgccatctgtcgcagcatgtgggcggcttt
gtcatcacccgcgggcggctcgacgaactggccccgatcgagaatgccgcgatggaggac
cgcaccctcatcgaatgggacaaggacgatatcgacacgctgggcatcctcaaggtcgat
gtgctgggactgggcatgctgacctgtatccgcaaggcctttgacctgatgcgagagcac
gagcagcggcatctgagcatcgacaccgtgccgcaagaggacgcggccacctatgacatg
ctctgcgccgccgatgcggtgggcgtgtttcaggtggaaagccgcgcacagatgaatttc
ctgccccggatgcggccacgcaccttttacgatctggtgatcgaggtcgccatcgtccgc
cccggcccgatccagggcggcatggtgcaaccctatatccggcgccgtcaggggctggaa
aaggccgaaccctttggcccggaattggcggcggtgaccgcgcgcaccctcggcgtgccg
ctgtttcaggaacaggcgctgcaaatcgccgtggtgggcgcgggctatacggcggaagag
gccgaccacctgcgccgctcgcttgcctcgttccggcgcatgggcacgatcggagcgcat
cgggacaccttcatcgccggcatgcggcgcaacggttatagccaggaggtggccgaacgc
tgtttcggccagatcgagggctttgccgattacggttttcccgaaagccacgcggcggcc
tttgccatgctggcctatgtctcggcctggctgaaatgccatcacccggcgatctttgcc
tgcgcactgctgaacgcgcagccgatggggttttatgccccggcccagatcgtgcgcgat
gcccgcgaccaccaggttgagctgcgcccgatctgcgtcaatgccagcgactgggacaac
cggctggaacggcgcgccgacggggcgctggccctgcggctgggctttcgccagatcaag
ggattccgcgaagaggatgccgcctggatcgtggcggcccgtggcaacggctatcccgat
ccccaggcgctgtggctgcgcgccggggtgacgccggcggtgctggaacggctggccgag
gcggatgcctttgccgatatggggatcgggcggcgcgacgcgctctggcaggtgcgggcg
atccgggggcaggcgccgctgcctctgttcaacgatccgctcgacggcgagatcatccac
gaaccgcaggtgaccctgcccgccatgcatctgggcgaggaggtggtcgaggattacgtg
tcgatgcgcctgaccctgcgcgcccacccgatggagctgctgcgccccgcgatccccggc
ctgaccccgcatgacaagctggccagcgtggcagcccaccgggtcagcgtctgcggcctt
gtcatcacccgccagcgcccgggcaccgcctcgggggtgatctttctgacactcgaggat
gaaaccggggtcagcaacgtggtggtctggcccaagatctatgaacagttccgccgcatc
gtgatgggcgggcggctgttgcgggtgaccggcaccctgcaacgcgaggggatcgtggtg
cacctgattgcccagcggatcgaggatctctctccccgcctcgccgatctgggccatccg
atggacagcgcggtcggccagaccacgccgcagaccgacagcgcgccccgtccgcgtccg
caaccccgggccatgcaccccagggagcaggccaaacgcctgttccccagccgcgatttc
cactga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)

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