KEGG   Ruegeria pomeroyi: SPO1893
Entry
SPO1893           CDS       T00215                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sil  Ruegeria pomeroyi
Pathway
sil03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPO1893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sil03019]
    SPO1893
   03009 Ribosome biogenesis [BR:sil03009]
    SPO1893
Enzymes [BR:sil01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SPO1893
Messenger RNA biogenesis [BR:sil03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SPO1893
Ribosome biogenesis [BR:sil03009]
 Prokaryotic type
  rRNA processing factors
   SPO1893
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AAV95172
UniProt: Q5LS75
Position
2017823..2020804
AA seq 993 aa
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKARDEDEEGGKSRSKPKRSR
SRSRSKAESLRSSDPVETMDVSETEISGMETIDLDEGDDRDDIDLIEGSSPMERVAETPV
EEPEDGADETVDQTADQAADEAADAAEDTDTTETDGETAQDNTEDRADEADDEDEDDGED
APRPRRGKADAASKDDSIESIAEEDDAEDLRPARKPRARKYKIQEVVKVRQVMLVQVVKE
ERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAAEMDVPQGAGL
IVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDI
DEVLVEGEGGYRIAKDFMKMIMPSHAKNVQRYEDQLPLFARFQVESYLNSMFNPTVQLKS
GGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDF
IDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPSC
HGTGLIRSDDNMALSILRQIEEEGTRRRSREVLVRCPVGIANYLMNQKREHIAQIEARYG
LSVRIEGDAHLVSPDFSLEKFKTATRSVPQVQAPVVSVDSRLMDQIDADEAFEEEDEAEE
VRTEPRGETAGEGDGDGKPKRKRRRRRRRKNGGNGGEDSTADGDSGEIGDEAAEDAADAA
PEAAEDAAVTEAEAEPAAAEGGEAEVEAVAEAEAEAEAPAKTPRKRTRTRKKPVKAEAAA
EAPADAMASADVPAVEGDAGETPAEADAEAEAAPVKKTPKPRKPRSRSKKAEAPAEAAEA
SVAAEAPAAESVEAEPATAVEATAPEAVAETVVDEAAQPAEDAIAAPAEPEAAPEPEVAQ
AEPAAPEMAVAEAEAEPDGPPKPKRRGWWSLGQ
NT seq 2982 nt   +upstreamnt  +downstreamnt
atggcaaagaagatgctcattgatgccacccacgcggaggaaacccgcgtcgtggtggtc
gacggcaacaaggtcgaggaattcgattttgagtccgaaaacaaacgccagctagctggc
aatatctatctggcaaaggtcacccgggtcgaaccctcgctccaggcggcatttgtcgat
tacggcggcaaccgtcacgggttcctcgccttctcggaaattcatcccgactactaccag
atccccgtcgccgaccgtcaggcgctgatggaggaagagcgcgcctatgccgaggcgcag
aaggcgcgcgacgaggatgaggaaggcggtaaatcccgctccaaacccaagcgcagccgc
agccgctcgcgcagcaaggccgaaagcctgcgctcctccgatccggtcgagaccatggat
gtgagcgagaccgagatcagcggcatggagacgatcgacctcgacgagggcgatgatcgc
gacgatatcgacctgatcgaaggcagctcgccgatggagcgcgtcgccgagacgccagtg
gaagagcccgaggacggcgccgatgagacggtggatcagacggcggatcaggcggcggat
gaggctgctgatgcggccgaggacaccgacacgaccgaaactgacggtgaaaccgcgcag
gacaacaccgaggatcgcgccgacgaggccgatgacgaggatgaggatgacggcgaagac
gccccgcgcccccggcgcggcaaggccgatgccgcctccaaggatgacagcatcgaatcc
atcgccgaagaggacgatgccgaggatctgcgcccggcccgcaagccgcgtgcgcgcaag
tacaagatccaggaagtggtcaaggtgcgccaggtgatgctggtgcaggtcgtgaaggaa
gagcgcggcaacaagggcgcggcgctgaccacctatctcagcctcgcgggccgctattgc
gtcctgatgcccaacaccgcgcgcggtggcggcatcagccgcaagatcaccaatgcggtc
gaccgcaagaaactcaaagagatcgccgccgagatggacgtgccccagggcgcgggcctg
atcgtgcgcacggcgggcgccaagcgcaccaaggccgagatcaagcgcgactatgaatac
ctccagcgcatgtgggagcagatccgcgaactgacgctgaaatccatcgcgccggccaag
atctatgaggaaggcgacctgatcaaacgctcgatccgcgacctctataatcgcgacatc
gacgaggttctggtcgagggcgaaggcggttaccgcatcgccaaggacttcatgaagatg
atcatgccgagccacgccaagaacgtgcagcggtatgaggatcagctgccgctgttcgcg
cgcttccaggtggaaagctatctgaactcgatgttcaacccgacggtgcagttgaaatcc
ggtggttacatcgtgatcggcgtgaccgaggcactggtggccatcgacgtgaactcaggc
cgggccaccaaggaaggctcgatcgaggaaaccgcgctcaagaccaatctcgaggccgcc
gaagaggtggcccgccagctgcgcctgcgcgacctggccggtctgatcgtgatcgacttc
atcgacatggacgagcgcaagaacaatgccgccgtcgagaaacggatgaaggacaagctg
aagaccgaccgtgcccgcatccaggtgggccggatctcgggctttggcctgatggaaatg
tcgcgtcagcgcctgcgccccggcatgatcgaggccaccacccagccgtgcccctcgtgc
cacggcaccggccttatccgctcggacgacaacatggcgctgagcatcctgcgccagatc
gaggaggaaggcacccgccgccgctcgcgcgaggtgctggtgcgctgcccggtgggcatc
gccaactacctgatgaaccagaaacgcgaacatatcgcgcagatcgaggcgcgctatggt
ctgagcgtgcgcatcgagggcgatgcgcatctggtcagccccgatttcagccttgagaag
ttcaagaccgccacccgctcggtgcctcaggtgcaggcgccggtggtttcggtggactcg
cggctgatggaccagatcgacgccgacgaggccttcgaggaagaggacgaggccgaagag
gtccggaccgaaccccgcggcgagaccgctggcgaaggggacggcgacggcaagcccaag
cggaaacggcgtcggcggcgtcggcgcaagaacggcggcaatggtggcgaggacagcacg
gccgacggcgacagtggcgagatcggtgacgaggcggccgaggatgcggcggatgccgcg
cccgaggcagccgaagacgcagccgtgaccgaggccgaggcggaacccgcagcggccgag
ggcggcgaagccgaggttgaagccgtggctgaggctgaggctgaagctgaagctccggcc
aagaccccgagaaagcgcacccgcacgcgcaagaaaccggtcaaggccgaagcggctgcc
gaggcgcctgccgacgcgatggcaagcgcggatgtccctgccgttgagggcgacgctggc
gaaaccccggccgaggcggatgccgaggctgaggccgcgccggtcaagaaaacgcccaag
ccgcgcaaaccgcgcagccgcagcaaaaaggccgaggcgcccgccgaggctgccgaggca
agcgtagcggccgaggccccggcagcggaaagcgtcgaagccgagcctgcaaccgccgtc
gaggcaacagcgcccgaggcagtggccgagacggttgtggacgaggcggcgcagcccgcc
gaggatgccatagcggccccggcagagccggaagcggcgcctgaaccggaagtggctcag
gcagagccggcagcgcccgagatggcggttgccgaggccgaggcggaacccgatggcccg
ccgaagccgaaacggcgcggctggtggtcgctgggtcaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (93)   
   KEGG ORTHOLOGY (1)   
   RefGene (90)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (105)   

Download RDF
DBGET integrated database retrieval system