KEGG   Simplicispira suum: C6571_07475
Entry
C6571_07475       CDS       T05361                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
simp  Simplicispira suum
Pathway
simp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:simp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C6571_07475 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:simp03400]
    C6571_07475 (ligD)
Enzymes [BR:simp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C6571_07475 (ligD)
DNA repair and recombination proteins [BR:simp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C6571_07475 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AVO41146
UniProt: A0A2S0MZ29
Position
complement(1588967..1591555)
AA seq 862 aa
MASRNPPEDALTRYREKRNFTRTPEPEGAVEPAAGALRFVIHKHWATRLHYDLRLECEGT
MKSWAVPKGPSLDPREKRMAVQVEDHPISYNSFEGQIPPGQYGAGRVVLWERGHWIPHSD
PVAGLRDGHLKFTLQGEKLHGSWALVRMGGKRFDPKKPAWLLIKERDAEARPADEYDVTE
ALPDSVNTGAAAKAQPAPKAAKQAPSQPERKSTAKISTQSAALGSPLKALPQTLAPQLAT
LANAPPSDGVGWIYELKFDGYRMLARIDARGAVRLFTRSGNDWTDKLASIADAIKALGLR
STWLDGELTATGDNGAPDFQRLQNAFDRAATTDLIYTLFDLPVYAGRDLREEPLLERRAA
LEALVQKDAGETLRFSAAFDARASDLVASACKIGFEGVIGKRADAPYRSGRSSQWIKLKC
SQRQEFVVGGFTEPQGGRSGLGALLLGVHDGKGALLYAGKVGTGFTDDALQRLRAQLEPL
VQKRCPFSAQPADARKAHWLKPTLVAEVAFAEWTQDGRIRHSVFKGLRTDKPAHSIVREQ
ATRPAATTAAQPKGKRPVGAKAPSPALPSSFSITHGERVIDAASGTTKRDLARYYATVAP
LMLEHLAGRPVALVRAPQGVGKETFFQKHGDAERLPGIEALDPQLDPGHGPLLEVVSAVG
LLSAAQMNVIEFHTWNARADRIERPDRITFDLDPGEGVAWPQIQEAAELVRVLLRELGLP
AFLKTSGGKGLHVVVPLKRLRDWDSTKDFSQAVVQHLARAIPQRFVGKSGPRNRVGKIFV
DYLRNGRGATTVSAWSARARPGLGVSVPVAWSELPSIASGAHWTVATIEDRLRLGNGPWT
GYDKAASALGEAMARLDFTPSA
NT seq 2589 nt   +upstreamnt  +downstreamnt
atggccagccgaaatccgcctgaagacgcactgacgcgctaccgggaaaagcgcaatttc
acgcgaacgcccgagcccgaaggggcggtggaacccgccgccggagcgctgcgctttgtc
atccacaagcactgggccacgcggctgcactacgacttgcgcctggaatgcgagggcacg
atgaaaagctgggccgtgcccaaaggccccagcctggatccgcgcgagaaacgcatggcc
gtgcaggtggaagaccaccctatcagctacaacagctttgaaggccagattccgccaggc
cagtacggcgcgggccgcgtcgtgctgtgggagcgcggccactggattccccacagcgac
cccgtcgccgggctgcgcgacgggcatctgaagttcacgctgcaaggcgaaaaactgcac
ggcagctgggcactggtgcgcatgggcggaaagcgttttgacccgaaaaagcccgcctgg
ctgctcatcaaagagcgggatgctgaggcgcggccggcggacgagtacgacgtgaccgaa
gcactgcccgacagcgtgaacactggtgcagcggcaaaggcccaacccgcgcccaaggcg
gccaagcaagcgcccagccagccagagcgcaagagcaccgcaaaaatatcaacccaatct
gcagcactcggaagcccactcaaggcgcttccccagacgctggcgccgcaactggccacg
ctcgccaacgcgccgccatcggatggcgtgggctggatttacgagctgaaatttgacggc
taccgcatgcttgctcgcatcgacgcgcgcggcgccgtgcgcttgttcacccgcagcggc
aacgactggaccgacaaactcgcctccatcgccgacgccatcaaggccttgggcctgcgc
tccacttggctcgacggcgagctcaccgctaccggcgacaacggagcgccggactttcag
cgcctgcaaaacgcttttgatcgcgcggccaccaccgaccttatctacaccctgtttgac
ctgccggtgtacgcggggcgtgacctgcgtgaagaaccgctgctggagcgccgcgcagcg
ctggaagcgctcgtgcaaaaagacgctggcgagaccctgcggttcagcgcagcgtttgac
gcccgcgcctcagacctcgttgcatccgcctgcaagattggctttgaaggcgtcatcggc
aagcgcgccgatgcgccttatcggagcggccgcagcagccaatggatcaagctcaaatgc
agccagcggcaagagtttgtcgtcggcggtttcaccgaaccgcaaggggggcgcagtggc
ctgggcgccttgctgcttggtgtgcacgatggcaaaggcgcgttgctgtatgccggcaag
gtaggtaccggctttaccgacgacgcgctccaacgtctgcgcgcgcagctcgagcctttg
gtgcagaagcgctgtccgttttcggcccagcctgcggacgcacgcaaggcgcattggctc
aagcccactctggtggccgaagtggccttcgctgagtggacacaagacggccgcatccgc
cactcggttttcaaaggcttgcgcaccgacaagccggcccacagcatcgtgcgcgagcag
gccactcggccggccgccacaacggcagcgcagcccaaaggcaaacgtccggtcggcgcc
aaggcaccgtcgccggcattgccatcgagtttcagcatcacccatggcgagcgcgtgatt
gacgcggccagcggcactaccaaacgggacctggcgcgctactacgccacggtggcgccg
ctgatgcttgagcacttggcgggccgcccggtggccctggtgcgcgcgccccaaggggtg
ggcaaggaaactttctttcagaagcacggggacgccgagcgcctgcccggcatcgaagcg
ctcgacccccaactcgacccgggccacggcccgctgctggaagttgtctcagccgtgggg
ctgctgtcggcggcgcaaatgaacgtcattgagtttcacacctggaacgcccgtgcagac
cgcatcgagcggcccgaccgcatcaccttcgacctggacccgggcgagggcgtggcctgg
ccgcaaattcaagaagcggccgaactggtgcgcgtgctgctgcgcgaactgggcttgccg
gcctttctgaaaaccagtggcggcaagggcttacacgtggtcgtcccgctcaagcgcctg
cgcgattgggacagcaccaaggatttttcgcaagccgtggtgcagcacctggcgcgcgcc
attccgcagcgcttcgtcggcaaaagcggcccgcgcaatcgcgtcggcaaaatttttgtc
gactacctgcgcaacggccgcggcgccaccaccgtgtcggcctggtctgcccgtgcccgg
cccgggctgggcgtatcggttccggtggcgtggtccgaattgccctcgattgccagtggc
gcgcactggacggtagccaccatcgaagaccggctgcgcctgggcaacgggccctggacc
ggttacgacaaagcggcgtcggcgttgggcgaagccatggcgcgcctcgacttcacgcca
tcggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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