KEGG   Sphingobium indicum B90A: SIDU_01240
Entry
SIDU_01240        CDS       T04604                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
sinb  Sphingobium indicum B90A
Pathway
sinb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sinb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SIDU_01240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sinb03019]
    SIDU_01240
   03009 Ribosome biogenesis [BR:sinb03009]
    SIDU_01240
Messenger RNA biogenesis [BR:sinb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SIDU_01240
Ribosome biogenesis [BR:sinb03009]
 Prokaryotic type
  rRNA helicases
   SIDU_01240
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: APL93260
UniProt: A0A1L5BK41
Position
complement(245812..247542)
AA seq 576 aa
MSFEHLPPLLSGALTRKGYESLTPVQAQVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAKE
LLGDASRLPAPGLPLALAIAPTRELALQVARELEWLYGEARARIATCVGGMDAAKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSGLKTVVLDEADEMLDMGFREDLEEILDGAPEGRR
TLLFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQAVTVAPADIENAVVNLLRY
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSKEAIQEQDNARLREKLMERADLDEQDWALGAELLEAKSAKEIAAMLV
RSARAALPAPEELLDASEAPQRRDGPRPGFEDTVWFRMDIGRRQNADPRWILPLICRRGH
VSRQDIGAIRIAANETLFEIPRAIVSRFIGSVKRTGEANDEGADIAFEQVEGTPREAARE
NRHGKGRPNDRGPRPPAHSPRPFKGGPRRPGPRKPR
NT seq 1731 nt   +upstreamnt  +downstreamnt
atgtctttcgaacacctcccccctctcctgtccggcgccctgacgcgaaagggctatgaa
agcctgacccccgtccaggcccaagtcacccagccggaagccgaaggccgcgacctcatc
gtctcggcccagaccggctccggcaagaccgtcgccttcggcctggccatggcgaaggaa
cttctgggcgacgccagccgcctccccgctcccggcctgccgctcgccctcgccatcgcc
ccgacccgcgaactggcgctgcaggtcgcccgcgaactggaatggctctatggcgaggcc
cgcgcccgcatcgccacctgcgtcggcggcatggacgccgccaaggaacgccgcgctctc
agccacggcgcgcatatcgtcgtcggcacgccgggccgcctgcgcgaccatctggaacgc
ggcgcgctcgacctttccggcctcaagaccgtcgtgctggacgaagccgacgagatgctc
gacatgggcttccgcgaggatctggaggaaattctcgacggcgcgcccgaaggccgccgc
accctcctcttctccgccaccatgcccaagccgatcgtggcgctcgccaagcgctaccag
aaggacgcgctgcgcatctccaccgtcagcgatgagcgcggccatggcgacatcagctat
caggccgtgaccgtcgcccccgccgacatcgaaaatgccgtggtcaacctgctgcgctat
catgaggcggagacggcgatcctcttctgcgccacccgcgacaatgtccgccacctccac
gccagcttgaccgagcgcggcttcgcggcggtggcgctgtcgggggagcatagccagaat
gaacgcaaccatgccctccaagcgctgcgcgaccgccgcgcccgcgtctgcgtcgcgacc
gacgtggcggcgcggggcatcgacctccccaatctcagccttgtcgtccatgtcgaactg
ccccgcgacgcggagacgatgcagcaccgctccggccgcaccggccgcgcaggcaagaag
ggcacggcggtcctcatcgtcccctatccccgccgccgccgggtcgaatccatgctgcgc
ggcgcgaagatcccggtcgaatggggcaccccgcccagcaaggaagcgatccaggaacag
gacaatgcccgcctgcgcgagaaactgatggaacgcgccgacctcgacgagcaggactgg
gcgctgggcgccgaactgctggaggcgaaatcggccaaggaaatcgccgccatgctggtg
aggagcgcccgcgccgccctccccgcgccggaggaactgctggacgccagcgaagccccg
caacgccgcgacgggccgcgccccggcttcgaggacacggtctggttccgcatggacatc
ggccgccgccagaacgccgacccgcgctggatattgccgctgatctgccgtcgcggccat
gtgtcgcggcaggacatcggcgcgatccgcatcgccgcaaacgagaccctgttcgaaatc
ccccgcgccatcgtatcgcgcttcatcggttcggtgaagcggaccggagaggccaatgac
gagggcgcggacatcgccttcgagcaggtcgagggcacgccccgcgaagccgcccgcgaa
aaccgccacggcaagggccgccccaatgatcgcggcccccgcccgcccgcgcacagcccc
cgcccgttcaagggcggccccaggcggcccggtccgcgcaagccccgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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