KEGG   Sphingobium indicum B90A: SIDU_15580
Entry
SIDU_15580        CDS       T04604                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sinb  Sphingobium indicum B90A
Pathway
sinb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sinb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SIDU_15580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sinb03021]
    SIDU_15580
   03019 Messenger RNA biogenesis [BR:sinb03019]
    SIDU_15580
Transcription machinery [BR:sinb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SIDU_15580
Messenger RNA biogenesis [BR:sinb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SIDU_15580
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 Spore_III_AA AAA_22 NACHT AAA AAA_25 AAA_14 GpA_ATPase
Other DBs
NCBI-ProteinID: APL95813
UniProt: A0A1L5BSF3
Position
3272362..3273618
AA seq 418 aa
MHLKDLKKKAPAELVTMAEELGVEGASTLRKQDLMFAILKVEADNGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN
FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcaccttaaggatctcaagaaaaaagcgcccgccgaactcgtgaccatggcggaggaa
ctgggcgtcgagggcgcatcgaccctgcgcaagcaggatctgatgttcgcgatcctcaag
gtcgaggccgacaatggcgagcagatcatgggcgagggcacgatagaggtgctgcccgac
ggcttcggcttcctgcgttcgcccgaagcgaatttcctcgccggtcccgacgacatctat
gtctcgcccaaccaggtgcgcaaattcggcctgcgcaccggcgacacggtggagggcgaa
atccgcgcccccaaggatggggagcgctatttcgccctgaccaagctcatttccgtcaat
ttcgacgatcccgaagtcgtccgtcaccgcgtcaatttcgacaatctgacgccgctctat
ccgacgcagaagctgacgctcgacgcgaccgacccgaccgtcaaggacaagtcggcccgc
gtcatcgacatcgtctcgccgcagggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgcaccggcaagaccgtgctgctccagaacatcgccaaggcgatcaccgacaaccatccc
gaagtcttcctgatcgtcctgctgatcgacgagcgtccggaagaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtttcctccaccttcgacgaaccggcgcagcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtggaacacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtggtgccgtcg
tcgggcaaggtgctgaccggcggcgtcgacgccaacgcgctccagcggcccaagcgcttc
ttcggcgcggcccgcaacatagaggagggcggctcgctctccatcatcgccaccgcgctg
atcgacacgggcagtcgcatggacgaggtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtcctcgaccgcaaggtggcggacaagcgcatcttcccggcgctggacgtc
ggcaagtcgggcacccgcaaggaagaattgctggtcgacaaggcgaagctcagcaagatg
tgggtgctgcgccgcatcctgatgcagatgggcacggtcgacgccatggaattcctgctc
gacaagatgaaggattccaagaccaacgaggatttcttcgactcgatgaaccagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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