KEGG   Ruegeria sp. TM1040: TM1040_3029Help
Entry
TM1040_3029       CDS       T00359                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sit  Ruegeria sp. TM1040
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:sit00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    TM1040_3029
Enzymes [BR:sit01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     TM1040_3029
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     TM1040_3029
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
RoseoBase: 
UniProt: 
Position
3198104..3198955
Genome map
AA seq 283 aa AA seqDB search
MPELPEVETVMRGLQPSMEGVVIARADVNRPDLRWPFPDRMTERLSGRRVLSMRRRSKYI
LADLDSGETLLVHLGMSGRMTVSGDPLGQFVHSHPQLEKHDHVVFHMDNGARVTFNDPRR
FGAMDLLETAKADSHKLLAVLGPEPLGNDFHESHLVSAFKGRRTPVKSALLDQGIIAGLG
NIYVCEALFRAGISPRREAGKISTSRVTSLVPIIRQVLQDAIAAGGSSLKDFRQANGELG
YFQHTFDVYGREGEPCRRAGCTGTVTRITQSGRSSFYCGKCQR
NT seq 852 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattgcccgaggtcgagacggtgatgcgcggtctgcagccttccatggagggt
gtcgtcattgcgcgcgcagatgtgaatcggccagatctgcgttggccttttcccgaccgc
atgacagagcgactgtctgggcggcgggtgctctcgatgcggcggcggtcaaaatacatc
cttgccgatctcgacagcggcgagacgcttttggttcatcttggcatgtccgggcggatg
acagtgtcgggcgacccgctggggcagtttgtgcattcacatccgcagcttgagaaacat
gatcatgtggtctttcacatggacaatggcgcacgcgtcacgttcaacgatccacgcagg
tttggcgcgatggatcttctggagacagccaaggccgacagtcataagttgctggcagtt
ctgggcccggagcctttggggaacgattttcatgaaagtcaccttgtttctgcattcaaa
gggcgcaggacgccggtgaaatctgcgctgctcgatcagggaatcattgcgggcctgggc
aatatctacgtctgcgaagcgcttttcagggccggcatttcgccacgtcgcgaagctgga
aaaatcagcacatcgcgcgtcacatcgctggttccgatcatccgtcaagtgttgcaggat
gcgatcgccgcgggcgggtcctcactcaaggatttccgccaagctaatggagaacttgga
tattttcagcatacctttgatgtctacgggcgcgaaggagaaccctgtcgacgcgccggt
tgcaccggaacagtcactcgaatcactcaatccggccggtcgtcgttctactgtggcaag
tgccaaagataa

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