KEGG   Ruegeria sp. TM1040: TM1040_3116Help
Entry
TM1040_3116       CDS       T00359                                 

Definition
(GenBank) succinyldiaminopimelate desuccinylase
  KO
K01439  succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit00300  Lysine biosynthesis
sit01100  Metabolic pathways
sit01120  Microbial metabolism in diverse environments
sit01230  Biosynthesis of amino acids
Module
sit_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:sit00001]
 Metabolism
  Amino acid metabolism
   00300 Lysine biosynthesis
    TM1040_3116
Enzymes [BR:sit01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.18  succinyl-diaminopimelate desuccinylase
     TM1040_3116
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_M20 M20_dimer Peptidase_M28
Motif
Other DBs
NCBI-ProteinID: ABF62090
JGI: TM10403116
RoseoBase: TM1040_3116
UniProt: Q1GMM6
Position
mega:88482..89669
Genome map
AA seq 395 aa AA seqDB search
MNKLSAPRAQHAVDPVELTADLVRCQTVTPEEGSALKLLSALLSEHGFQCQRIDRNGIPN
LFAIWGEDRNGRTFGFNGHTDVVPIGDPKDWTVDPFGAEIRDGILYGRGSTDMKSGVAAF
AAAAIEFVNETPPDGRVIIAITGAEETGSPDGTRAIVQWMEANDIRADHFIVGEPTSLKS
IGDAIKIGRRGTITVFLTVTGVQGHSGYPEKANNPLPALVDLLQGFGQAAMDEGTEFFAP
STLAITTIDTGNPARNVIPATCKATLSIRFNDKWTSGKVLDWVSRHTRAAEDKFGVTISA
DHYLSGECFFTPPGALSKLVQDAVEQETGQRPQMTTLGGSSDARHLFKHCPVVEVGLTGE
TLHQVDEHVSVAEINALKTVYGRILRDYFGSEGKI
NT seq 1188 nt NT seq  +upstreamnt  +downstreamnt
atgaacaaattgtccgcaccacgcgcccaacatgccgtcgaccctgtggaactgacagcc
gaccttgtacgctgccagaccgtgacccccgaggaaggtagtgcgcttaagctgctaagc
gcattgctgagcgagcatgggtttcagtgtcagcgcattgatcgcaacggtattcccaat
ctatttgcgatttggggagaggaccgaaatggacgcacattcgggtttaacggtcatacc
gatgtcgttccgataggcgatccaaaagactggaccgtcgatccttttggagcagagatc
cgtgacggcattctctacgggcgcggctcaacggacatgaaatcaggcgttgcggccttt
gccgcggccgccatcgagtttgtcaacgaaacaccacctgatggccgcgtcatcatcgcg
atcacaggtgccgaagaaaccggctcgcccgacgggacacgagccattgtccaatggatg
gaggccaatgatattcgggccgaccactttatcgtgggcgaaccgacgagccttaagtcc
atcggggacgcaataaagatcggtcgccggggaacgatcacggtctttctgaccgtgact
ggcgtgcaaggccattcgggatacccggaaaaagcgaacaacccgcttcctgcactggtc
gatcttttgcaaggtttcgggcaggcggccatggacgaaggaacggaatttttcgcgcct
tcaacacttgcgatcacgacgattgatacaggcaatcctgcacgcaacgtcattcctgcg
acgtgcaaggcgaccctgagcatccggttcaacgacaaatggacctctgggaaagtcctt
gactgggtgtccaggcatacgcgcgccgccgaggacaagttcggtgtcacgatcagtgcc
gatcactacctgtcgggagagtgttttttcacaccgcccggggctctttcaaagctggtt
caagatgccgtcgaacaggaaacgggacaaagaccacagatgacgaccctcggcggcagt
tccgatgcccgccacctcttcaagcactgcccggtagtcgaggttggtttgaccggcgag
accttgcaccaggtggatgagcacgtctccgtggccgaaatcaatgcgctcaagaccgtc
tacggcagaatcttacgggactacttcgggtcggagggcaagatatga

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