KEGG   Setaria italica (foxtail millet): 101753852
Entry
101753852         CDS       T02818                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03013  Nucleocytoplasmic transport
sita03015  mRNA surveillance pathway
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101753852
  09122 Translation
   03013 Nucleocytoplasmic transport
    101753852
   03015 mRNA surveillance pathway
    101753852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101753852
   03041 Spliceosome [BR:sita03041]
    101753852
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101753852
    TREX complex
     101753852
Spliceosome [BR:sita03041]
 Complex C
  Other components
   EJC/TREX
    101753852
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101753852
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 101753852
NCBI-ProteinID: XP_004973480
UniProt: K3YJ29
Position
VI:complement(27330310..27336870)
AA seq 273 aa
MSYYARRGGDRGTGRIQGSGGKGGHALRGRSGLPPRGPLGVSSRPSARTIAKSFSRTKDM
TWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPN
GTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRATRT
VVMTPEFSQRGRGSSSRPLSNPSNRFNNRGGFQAGRGRGQFQARGRGRGQFQARGRGRGQ
FQGRGGRGRKPEKTADELDKDLESYHAEAMKTD
NT seq 822 nt   +upstreamnt  +downstreamnt
atgtcatattatgccagaaggggtggagataggggtactggccgtatccaaggaagtggt
ggtaaaggtggacatgccctgcgtggaagatcaggactgcctcctcgaggacctctcggg
gttagctcccgaccgtctgcacgcacaattgctaagtcatttagcagaaccaaagacatg
acctggagacctgatctgtttagtgatagtatggcggctagtggaatagaaactggtaca
aaactgtacatttcaaacttggactatggggtttctaatgaggatataaaggaactattt
tcagaagttggtcatttgaaacgctttgctgttcactacgatggttatggccgcccaaat
ggcactgcagaggtggtgtttacacggaggagtgatgcaattgctgcactgaagcgttat
aataatgttctacttgatggaaaagctatgaagatagaagtcattggaagtgacttagga
ttgcccatgacacctcgtataaatgttgttggggcatctaatggcagagctacaagaaca
gttgttatgacgcctgagtttagtcaacgtggcagaggttcaagcagtaggcctttaagt
aatccgagcaacaggtttaacaaccgtggtggtttccaagctggtcgaggccgtggtcag
ttccaggctcgtggcaggggccgtggacagttccaggcccgtggcaggggccgcggtcag
ttccagggccgtggtggcagagggaggaagcctgagaagaccgcagatgagctggataaa
gacctggaaagttatcatgccgaggccatgaaaaccgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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