KEGG   Setaria italica (foxtail millet): 101776421
Entry
101776421         CDS       T02818                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03018  RNA degradation
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101776421
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101776421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101776421
   03041 Spliceosome [BR:sita03041]
    101776421
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101776421
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101776421
Spliceosome [BR:sita03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101776421
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 101776421
NCBI-ProteinID: XP_004976961
UniProt: K3YB45
Position
VII:complement(31037653..31040023)
AA seq 98 aa
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq 297 nt   +upstreamnt  +downstreamnt
atggctgggcgcaaggagactgcgctagaccttgcgaagttcgtcgacaagggcgtccag
gtgaagcttaccggcggccggcaagtgacagggactttaaagggatacgaccagctcctc
aacttagtgctggatgaagcagttgagtccgaaagagagcaagatgatccattgaagcta
tctgggaaaaccagacagcttggtctcattgtgtgcaggggcacggcggtcatgctggtc
tcaccaactgatggaaccgatgagatcgccaaccctttcctcgccgatggggcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system