KEGG   Setaria italica (foxtail millet): 101780669
Entry
101780669         CDS       T02818                                 
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
  KO
K12856  pre-mRNA-processing factor 8
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101780669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sita03041]
    101780669
Spliceosome [BR:sita03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    101780669
 Complex C
   U5 SnRNP specific factors
    101780669
SSDB
Motif
Pfam: PROCN PRP8_domainIV U6-snRNA_bdg PRO8NT U5_2-snRNA_bdg PROCT RRM_4 JAB
Other DBs
NCBI-GeneID: 101780669
NCBI-ProteinID: XP_004964745
Position
IV:4434583..4444034
AA seq 2363 aa
MWNGAPPPPPPHMAAAPPPPGTTGAGAGQPPPPPPPAGAPQGAKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDSEEDAAVYEWFYDHKPLMK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGIYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERKVTEEDDDEDFCLPEDVEPLLKSTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLIL
GLTRASELAGPPQMPNEFLTYADTKIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDLF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLNDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILEGNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNVPWNFNFMGVKHDPLMKYNMKLGMPRDFYHEDHRPT
HFLEFSNIEEGEVAEGDREDTFS
NT seq 7092 nt   +upstreamnt  +downstreamnt
atgtggaacggcgcgccgcctccgccgccgccgcacatggcggcggccccgcctcctccg
ggcacgacgggggccggggcaggccagcccccgcccccgccgccgccggccggggcgccg
cagggcgccaagccgctgacgccggcggagctggaggcgcagttggtggagaaggcccgc
aagtggcaccagctcaactcgaagcgctacggagacaagcgcaagtttgggttcgtcgag
gcgcagaaggaggacatgcctcctgagcacgtccgcaaaatcatcagagatcacggagac
atgtcctccaagaagtacaggcacgacaagcgtgtttatcttggagcgctcaaatttgtg
ccccatgctgtctacaaactactggagaacatgccaatgccttgggagcaggttcggcat
gtgaaaattttgtatcacattactggggctatcacttttgtaaatgaaatcccctgggtg
gtggaacccatataccttgcacagtggggtacaatgtggatcatgatgcggagagagaag
agggataggcggcattttaaacgaatgcgctttcctccatttgatgatgaggagcctcca
ctggactatgctgataatctgttggatgttgaaccactcgaggccatacagttggagttg
gacagtgaagaagatgcagctgtatatgaatggttctatgaccacaagcctcttatgaag
accaagcttataaacggccccagctacaggaaatggcatctatctcttcccataatggca
acactatatcgccttgctggccagctgttgtcagacctgattgataggaattatttctac
ttgtttgatatggaatctttctttactgccaaagcactaaatatgtgcattccagggggt
ccgaagtttgaaccgctgtaccgtgatatggagaagggtgatgaggactggaatgagttt
aatgacataaataaactcatcatacgtcagccacttcgaactgagtataggattgctttc
cctcatctatacaataacaggccaaggaaagtgagacttgggatctatcatacccccatg
ataatgtatatcaagacagaggatccagatttgccagcattctactatgatcctctgata
aatcccatcacttcaactaacaaggttgatcgtcgggagaggaaagtaaccgaagaggat
gatgatgaagatttttgtctcccagaagacgtggaacctctcttgaaaagcactgaactc
tacactgatacaacagccgctggtatatcattgctttttgctccaaagccttttaacatg
cgatctggcagaacacgtcgtgcagaggacattcctcttgtatcggagtggttcaaggag
cattgcccaccagcttatcctgtgaaagttcgtgtgagttaccagaagctgttgaagtgt
tatgtactcaatgagctacatcataggcctcccaaggctcagaaaaagaagcatctgttc
cgttcactccaagcaacaaagtttttccaaactactgagcttgactgggcggaagcaggc
ctgcaagtttgcaagcaggggtacaacatgctgaacttgttgattcacaggaagaatctt
aactatcttcatttagactacaatttcaatttgaaacccgtgaagactcttacaacaaag
gaaaggaaaaaatctcgttttggaaatgcattccatctgtgtcgtgaaattttacgactt
actaagttggtcgttgatgctaacatccagttccgtctgggaaatgttgatgctttccag
ttggcagatggtctgcaatacatattctctcatgttggccagctaactggtatgtatagg
tacaagtaccgattgatgaggcagattaggatgtgcaaggatctgaagcacttgatatat
taccgtttcaacactggccctgttggaaaaggacctggctgtgggttttgggctccaatg
tggagagtgtggctcttcttccttcgcggtattgtcccattattggagcgctggttgggt
aatttgttggcaaggcagtttgagggtcggcattcgaagggagtagccaaaaccgtaaca
aagcaacgtgttgagtctcattttgatttggagcttcgtgctgcagttatgcacgatgtt
ctagatgctatgccagagggcatcaaacaaaacaaggcccggactatattacagcatctt
agtgaggcatggcgatgctggaaggcaaatatcccatggaaagtccctggcctacctgtg
cctattgagaacatgattcttcgttatgtgaagtcaaaggcagattggtggacgaatgtt
gctcattacaaccgtgagcgtatcaggcgtggtgctacagttgacaagactgtttgtcgg
aaaaatcttggaaggttaactcgtctatggctgaaggcagaacaagagaggcaacacaat
tacctgaaagatgggccatatgtaactcctgaggaagctgttgctatttatacaacaaca
gttcactggctggaatcaaggaagttctcaccaattccttttccgccactatcatacaag
catgacaccaaacttcttattcttgcactggaaaggctgaaggagtcatacagtgtagca
gttaggttgaaccaactgcaacgggaggagcttgggttgattgaacaggcttacgataat
ccacacgaagcactgtcaaggattaaaaggcatcttcttactcagcgggcgttcaaagaa
gttggcatagaattcatggacttatacagctacttgatcccagtatatgaaatcgaacct
cttgaaaaaatcactgatgcataccttgaccagtacttgtggtacgagggggacaaacgc
catctcttcccaaattgggtgaagcctgctgattctgaaccaccacctctacttgtttat
aaatggtgccagggcataaacaatttacaggatgtatgggacacaagtgatggacagtgt
gttgtgatgctccagacaaaatttgagaagttctttgaaaaaattgatctgacactgttg
aacaggcttcttcggttggtcttagatcataacatagctgattatgttactgcaaagaac
aatgttgtgttgtcttacaaggacatgagccacacaaattcttatggtctcattcgaggg
cttcagtttgcatcttttgttgttcagtattatggccttgtgctggatctcctgattctc
ggtctaacacgtgcaagtgagcttgctgggccacctcagatgccaaatgagttccttaca
tatgctgacacaaaaattgagacaaggcatcccatcagattgtattctcgatatattgac
aaggtgcacatattgttccgcttcactcatgaggaagcgcgagatctaattcagcggtac
ttgacagaacatcctgatcctaacaatgagaacatggttggctacaataacaagaaatgt
tggcctagagatgcaagaatgaggctgatgaaacatgatgtaaatcttggaagaagtgtg
ttctgggatatgaagaaccgccttccaaggagtattacaaccttagaatgggagaatagc
tttgtctctgtttacagcaaggacaatccaaacctgctttttagcatgtgtgggtttgaa
gtccgtatactgccaaagatacgaatgactcaggaggcattcagcaacacaaaggatgga
gtatggaatttgcagaatgaacagacaaaagaaaggacagcaattgcctttctgagagtc
gatgatgagcatatgaaggtgtttgagaaccgtgttaggcagattctaatgtcatcaggg
tcaacaacattcaccaagatagtcaacaagtggaatacagctctcattggccttatgaca
tatttccgcgaagcaacagtccatacgcaggagcttttggatttacttgtcaaatgtgaa
aacaagatccagactcgtataaagattggcctgaattcaaagatgcctagtaggtttcct
cctgtcatcttctatacacctaaggaaattggaggtctaggaatgctgtcgatgggtcat
attcttataccacaaagcgatcttaggtacagtaagcagacagatgttggtgtaacacat
ttccgaagtggtatgagccatgaagaggaccagcttattcctaacttgtatcgctacatc
cagccatgggagagtgagtttattgattcacagcgtgtttgggctgagtatgctttgaag
aggcaggaagcacaatctcaaaacagacggttgacccttgaggatcttgaagactcatgg
gatagaggtatacctcgtatcaacactcttttccaaaaggaccgccatacgctagcctat
gataaaggatggagagtgagaacagattttaagcaatatcaagtgctgaaacagaaccca
ttctggtggacacatcagcggcatgatgggaagctttggaacctaaataactacagaact
gatgtcattcaagcgcttggtggtgtagaaggtatcctggaacatacattatttaaagga
acttatttccctacctgggagggtctgttttgggagaaggcatcaggtttcgaagagtct
atgaaatacaagaaactgacaaatgcacagcgttctgggctcaatcaaatccccaatcga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaacgtgtatgttggtttccag
gtccagctagatcttacggggatattcatgcacgggaaaattcccacattgaagatttct
ctgatccagatcttccgtgcacatttgtggcagaagatacatgaaagtgttgttatggat
ctttgccaagttttggaccaagagttggatgcactggagatcgagactgtacagaaagag
acaatacatcccaggaagagttacaagatgaacagttcatgcgcagatatcctcctcttt
gctgcacacagatggcagatgtcaaaaccaagcttagtttctgagtcgaaggatctcttc
gatcagaaagcaagtaacaagtattggattgatgttcaactgcgttggggagattatgat
tcgcatgacatagaacgttatacaagagccaagttcatggattacacaacagacaatatg
tccatctacccatcacctactggggtgatgattggaattgatctagcgtataatttgcac
tctgcttttggcaactggttccctgggtcaaagcccctacttcagcaagcaatgaacaag
atcatgaagtcaaatcctgctctgtatgtgctgagggagaggataaggaagggtctgcag
ttgtactcatctgaacccactgaaccatatctgtcttcacaaaactatggagagatcttc
agcaatcaaatcatatggtttgtggatgatacaaatgtgtatcgagtcactattcacaaa
acctttgagggtaacttgaccacaaaaccaatcaacggtgctattttcattttcaatcca
agaactggtcaacttttccttaaggttatccacacaagtgtatgggcggggcaaaagcgt
cttggacagctggccaagtggaaaacagctgaggaggttgctgcattggttcgatctctg
cctgtagaagagcagccaaagcaaattattgtgacaaggaagggcatgttggatccattg
gaggtccatctactcgacttccctaacattgttatcaagggcagtgagctgcaacttcct
ttccaggcttgcttaaagattgagaagtttggtgatcttattctgaaggcaactgaacca
cagatggttctttataatatatatgatgattggttgaaaagtatctcttcatacacagca
ttctctcgtatcgtacttattctacgggctctacatgtgaataacgagaaggcaaagatg
ttgctcaaacctgacaaaacaattgttactgaaccacatcatatatggccaactttgaat
gatgaacagtggttgaaggttgaatgtgcactaagggacctcattctttctgattatgca
aagaaaaacaatgtcaatacttctgcactgacgcaatctgaaattcgagatatcatactt
ggtgctgaaattgctccaccatcacagcagcggcaacagatagctgagattgagaaacag
tctagagagacgactcagttaactgctgttaccacaaggacaacgaatgtacatggagat
gagctcattatcacgacaacaagtccatacgagcaacaagcgttcgcatcgaagactgat
tggcgtgtcagggccatctctgccacaaacttgtatcttcgtgtcaatcacatttatgtc
aattctgacgatataaaggagactggctacacttatattatgccaaagaacatactgaag
aagttcatatgcgtagcagatctgcggacacaaatcgctggattcttgtatgggctgagt
ccacaggacaatcctcaagttaaagagatcaggtgtatagccattccaccgcagcatgga
actcaccagatggtgaccctgccagcaaatcttcctgagcatgagttccttaatgacctg
gaaccattgggatggatgcatacccagccaaatgaagctccacagctatcaccacaggac
ctgacatcacacgctaagattctggagggcaacaaacaatgggatggtgagaagtgcatc
attctgacatgcagcttcacgccaggatcttgctcgttgactgcatacaagctgacacca
agcggttacgagtggggacgcagcaacaaggacaatgggagcaacccgcatggatacctc
ccaactcattatgagaaggtccagatgcttcttagtgaccgcttccttggcttctatatg
gttccagataacgtcccttggaacttcaacttcatgggagtgaagcatgacccgctgatg
aagtacaatatgaagctgggcatgccccgggacttctaccacgaggaccaccggccaaca
cacttcctggagtttagcaacatcgaggagggtgaggtcgcagaaggggatagggaggac
accttctcgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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