KEGG   Setaria italica (foxtail millet): 101781659
Entry
101781659         CDS       T02818                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
sita  Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:sita00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101781659
   03041 Spliceosome [BR:sita03041]
    101781659
   03036 Chromosome and associated proteins [BR:sita03036]
    101781659
Enzymes [BR:sita01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101781659
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101781659
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101781659
Spliceosome [BR:sita03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    101781659
Chromosome and associated proteins [BR:sita03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    101781659
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 101781659
NCBI-ProteinID: XP_004955769
UniProt: K3ZRE6
Position
II:complement(6379719..6385709)
AA seq 649 aa
MRSSWADSVANAEESAPATGAANGSVANHGNPRPTRSSYVPPHLRGRPAGGGFDAQAGSV
APGPGGPLPSAAAQPPAQAAAVGGPRWAGIVNGDGSGSVGAPRQGYGGGGSRGGGGGGGA
WNSRPGGWDRRDREPDPFAKAEAEEVVFEGDNTGINFDAYEDIPVETSGHDVPPPANTFA
EIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIL
KSRPPQRPRSSRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQLR
ELERGVEILVATPGRLMDLLERARVSLQNIMYLALDEADRMLDMGFEPQIRKIVEQMDMP
PRGERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYL
MDLLHAQKANGTHGKQALTLVFVETKRGADALEDWLYRNGFPATSIHGDRTQQEREHALR
SFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF
NESNLSLAKELSVLMQEANQEVPQWLERYAARPSYGGGGGRNRRSGGGARFGDRDFRRDR
GAGGYGGGAGGYGGGGGGGYGGGSSGYGGGGYSGGGGGYGGGQGTSAWD
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgcgatcttcatgggctgactcagttgcgaacgccgaggaatcggcgcccgcgactggt
gctgctaacggatccgttgctaatcacggcaacccccgccccacgcgcagctcctacgtc
ccgcctcacctccgtggccgtcctgctggtggtggctttgatgcccaagcaggctcagta
gcgccaggaccaggtggcccattgccctcggctgctgcacagcctcctgctcaggctgct
gctgttggtggccctcgctgggctgggattgttaatggtgatggcagtggcagtgtgggt
gctcctcgccagggctatggtggtggtggtagccgtggtggtgggggcggtggtggtgcc
tggaactcccgtcctgggggttgggaccgcagggaccgcgagccggatccttttgccaag
gctgaggcagaagaagttgtcttcgagggcgataacactggcatcaattttgatgcctat
gaagacatccctgttgagaccagtggccacgatgtacctccaccggccaacacatttgca
gagattgatttgggtgatgcgctgaatgagaatatccggaggtgcaagtatgtgaaacca
acaccggtgcagcgttatgccatcccaatctccattgctgggcgggatcttatggcctgc
gcgcagactgggtctggaaagactgcagccttctgtttcccaatcatcagtggcatcttg
aagtcaaggccaccgcagaggccccgtagttcaaggactgcgtgtcctctggctctgatc
ttatctcccactcgtgagctttcagtccaaatccatgaagaagcaaggaagtttgcatat
cagactggtgtcagagttgtggttgcgtatggaggtgcaccaataacaaatcagctgagg
gagttagagagaggtgttgaaatcctggtggcaactcctggacgcttaatggatctgttg
gagagggctagagtctcactgcaaaacatcatgtacttagctctcgatgaagctgatcgg
atgcttgatatgggttttgagccacagatacgtaaaattgttgagcagatggacatgcct
ccacgtggcgagaggcagacgatgttgtttagtgctacattcccaaaagagatacagagg
atggctgctgatttccttgctgattacatctttcttgctgttgggagagttggttcaagt
actgatttgattgttcagagggtggagtttgtccttgatgcagacaaacgtagctacctc
atggaccttcttcatgcacagaaggctaatggtacacatgggaagcaagctcttactttg
gtcttcgtggagacaaagaggggcgctgatgctctggaggactggctctacagaaatggc
ttccctgcaactagcattcatggagacaggacacaacaggaaagggaacatgctcttaga
tcgttcaagagtggagcaactcccattcttgtggcgactgacgtcgctgctcgtggcctt
gacataccacatgttgctcatgtgatcaattttgacctcccaaatgatatagatgactat
gtccatcggataggaaggactgggcgtgcaggcaaatctggcctggcgacagcatttttc
aatgagagcaacctttctctggcaaaggagttgagtgtgctcatgcaagaggccaaccag
gaggttcctcagtggcttgagcgctacgctgcccgtccatcctacggaggtggtggcggt
agaaaccgcagatcaggtggtggtgccagatttggcgaccgcgatttccgacgagacagg
ggtgccggtgggtatggtggtggcgccggtggttatggtggtggtggtggtggtggatat
ggtggagggtcatcgggatatggtggtggtggctattccggcgggggtggcggctatggt
ggtggtcagggtacgagcgcttgggactga

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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