KEGG T01201: SJA

Sphingobium japonicum: SJA_C1-17220

Entry

SJA_C1-17220 CDS T01201

Gene name

lig

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sjp Sphingobium japonicum

Pathway

sjp03410	Base excision repair
sjp03420	Nucleotide excision repair
sjp03430	Mismatch repair
sjp03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sjp03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sjp03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sjp03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sjp03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

1:1727660..1729243

AA seq 527 aa
MRAFSQLLDGLVYTRSRNGKLDLIAAYMRSAPDPDRGWALAALTGNLDLKAVKSSTIAEM
TRARVDPVLFEMSRDYVGDLAETVALLWPKAEDQPPEVDDGSLTLSAIIDRLHATSRAAA
PATLARMMDHLDASGRFALLKLATGGLRVGISARLAKTGFAQAFNLDVDDVEECWHALAP
PYAALFQWAEGKADRPDPAGTPFFRPFMLAHPLEAESVDLTDYAAEWKWDGIRVQIVGTP
GETRLYSRAGDDITGSFPDIAQALRHHAVLDGELLVKGEFQGGEAASFNALQQRLGRKAV
TAKMMEDYPAFVRLYDILLDADEDLRPLPWEQRRARLESIVPQLDPHRFDLSALIEAPDF
DALADIRAGARDAAIEGVMLKRRDSPYVAGRKAALWYKWKRDPLTADCVMMYAQRGHGKR
SSFYSDYTFGCWTEEGELLPVGKAYSGFTDEELKWLDRFVRTNTINRFGPVREVEKSLVL
EVAFDSIHESRRHKSGLAMRFPRISRIRRDKPAHEADSIAGLRRFLT

NT seq 1584 nt +upstreamnt +downstreamnt
atgcgcgccttctcccaactgctcgacggcctggtctacacccgctcccgcaacggcaag
ctggacctcattgccgcctatatgcgcagcgcccccgaccccgaccggggctgggcgctc
gccgcccttaccggcaatctggacctgaaggccgtaaaatcctccaccatcgccgaaatg
acccgcgcccgcgtcgaccccgtcctgttcgaaatgagccgcgactatgtcggcgacctg
gccgaaaccgtcgccctgctctggcccaaggccgaagaccagccgccggaggtggacgac
ggctccctcaccctctccgccatcatagaccggctccacgccaccagccgcgccgccgcc
cccgcgaccctcgcccggatgatggatcatctcgacgcctccggccgcttcgccctgctc
aagctggcgaccggcggcctgcgcgtcggcatctccgcccgcctcgccaagaccggcttc
gcgcaggccttcaacctcgacgtcgacgatgtggaggaatgctggcacgccctcgccccg
ccctatgccgccctcttccaatgggcggaggggaaggccgaccgccccgacccggcgggc
acgcccttcttccgccccttcatgctcgcccacccgctggaggcggaaagcgtcgacctc
accgactatgccgccgaatggaaatgggacggcatccgcgtccagatcgtcggcacgccc
ggcgaaacccgcctctacagccgcgccggggacgacatcaccggcagcttccccgacata
gcgcaggccctgcgccaccacgccgtcctcgacggcgaactgctggtgaagggcgaattt
cagggcggagaagccgccagcttcaacgccctccagcaacggctgggccgcaaggcggtg
acggcgaagatgatggaagactatcccgccttcgtccgcctctacgacatattgctggac
gccgacgaagacctccgcccgctgccgtgggaacaacgccgcgcccggctggaaagcatc
gtcccgcaactcgacccgcaccgcttcgacctgtccgccctgatcgaagcgcccgatttc
gacgccctcgccgacatccgcgcaggcgcccgcgacgccgccatagagggcgtgatgctc
aaacgccgcgacagcccctatgtcgcggggcgaaaggccgcgctctggtataaatggaaa
cgcgacccgctgaccgccgactgcgtgatgatgtacgcgcagcgcggccacggcaaacgc
tcgtccttctattcggactacaccttcggctgctggacggaggagggcgaactgctgccc
gtgggaaaggcctatagcggctttaccgacgaggaactgaaatggctcgaccgcttcgtg
cgcaccaacacgatcaaccgcttcggcccggtgcgggaggtggaaaagtcgctggtgctg
gaggtcgccttcgacagcatccacgaaagcaggcgccacaaatccggcctcgccatgcgc
ttcccccgcatttcccgcatccgccgcgacaaaccggcgcatgaggcggacagcatcgcc
ggcctcaggcggttcctgacctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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