KEGG   Sanguibacter keddieii: Sked_11300Help
Entry
Sked_11300        CDS       T01214                                 

Definition
DNA-(apurinic or apyrimidinic site) lyase/Formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
ske  Sanguibacter keddieii
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:ske00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Sked_11300
Enzymes [BR:ske01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Sked_11300
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Sked_11300
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
1307207..1308136
Genome map
AA seq 309 aa AA seqDB search
MPELPEVETVRDGLARHVLGARVDCVEVRRDYSVRRHEGGPVDFAARLSGHRLVEAARRG
KYLWLTLDEPGLALLGHLGMSGQLLVRSGDTLTAESSHLRVRLHLTAADGTPLALDFVDQ
RTFGHLSVTELVATPDGLPGGLGTDEPLVPEPVSHIARDLLDPAVAEGTAGRTALVDRVR
RRRTGIKRALLDQTVVSGIGNIYADEALWRASTHYARGTAGMSRAQVAAVLAAAEQVMRE
ALSQGGTSFDALYVNVNGASGYFDRSLAAYGQAGKPCRRCGATIRRDEFMNRSSFSCPVC
QPRPRNASR
NT seq 930 nt NT seq  +upstreamnt  +downstreamnt
gtgcctgagctccccgaggtcgagacggtccgcgacggcctcgcccggcacgtgctgggc
gcgcgcgtggactgcgtcgaggtccgccgcgactacagcgtccgtcggcacgagggcgga
ccggtcgacttcgccgcgcgcctctcgggccaccgcctggtcgaggccgcacgacgcggc
aagtacctctggctgactctcgacgagcccggcctcgcgctcctcgggcacctgggcatg
agcggccagctcctcgtgcgctcgggggacaccctcaccgccgagtcgagccacctgcgg
gtccggctccacctcaccgcagcagacggcacacccctcgccctcgacttcgtcgaccag
cggaccttcggtcacctcagcgtcaccgagctcgtcgcgacccccgacggtctgccgggc
ggcctcggcaccgacgagccgctcgtccccgagcccgtctcccacatcgcgcgcgacctc
ctcgacccggccgtcgccgaggggaccgccggacggacagccctcgtcgaccgggtccgc
cgccggcgcaccgggatcaagcgggcgctgctcgaccagaccgtcgtctcgggcatcggc
aacatctacgcggacgaggccctgtggcgggcgtccacgcactacgcccgggggaccgcc
gggatgtcccgcgcccaggtcgccgcggtgctggccgccgccgagcaggtgatgcgcgag
gcgctcagccagggcgggaccagcttcgacgcgctctacgtcaacgtcaacggtgcgtcg
ggctacttcgaccggtctctcgccgcctacggccaggccggcaaaccctgccgcaggtgc
ggtgcgacgatccggcgcgacgagttcatgaaccgttcgtcgttcagctgcccggtatgc
cagccgcgccctcggaacgcgtcgcggtag

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