KEGG   Streptomyces leeuwenhoekii: sle_19240
Entry
sle_19240         CDS       T04414                                 
Symbol
sle_19240
Name
(GenBank) Putative ribonuclease J Rv2752c
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sle  Streptomyces leeuwenhoekii
Pathway
sle03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sle00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    sle_19240 (sle_19240)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sle03019]
    sle_19240 (sle_19240)
Messenger RNA biogenesis [BR:sle03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     sle_19240 (sle_19240)
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: CQR61385
UniProt: A0A0F7VNU8
Position
chromosome:complement(2370254..2371939)
AA seq 561 aa
MSHPHPELGPPPPLAEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLQVAEGNRERVGPFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLTDSTNAEVPGFTPHERDISGVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAYEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKALDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGAMTGVPHD
RIVIAEDGVAVDLVEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VIDASTGKITGGPHIQARGSGIDDSAFGDVIPRITDVLERSAQDGVVEPHQMQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccgcatcctgaactgggcccgcccccgccgcttgccgaaggcggcctgcgg
gtcaccccgctcggcggcctcggcgaaatcggccggaacatgacggtgttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gatctgatcctgccggacttctcgtccatccgggaccgcctcgacgacatcgagggcatc
gtcctcacccatggccacgaggaccacatcggcggcgtcccctacctcctgcgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctgcaggtggcggaagggaaccgcgagcgcgtcggc
ccgttcgactgcgagttcatcgcggtcaaccactccatccccgacgcactggccgtggcc
atccgcacccccgcgggcatggtggtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctccacgcgttcgcgcggctgagcgaggagggcatcgac
ctcctcctcaccgactccacgaacgcagaggtccccggcttcaccccgcacgagcgggac
atctccggcgtcctgcgccaggtgttcgccggcgcccgcaagcggatcatcgtggccagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcgtacgagtacggccgc
cgcgtcgccttcgtcggccgctccatggtccggaacatgggcatcgcccgtgacctgggc
tacctgaaggtccccccgggcctggtcgtcgacgtcaaggccctcgacgacctcccggac
cacgaggtggtcctggtctgtacggggtcccagggcgagccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtcgagggcgacacggtgatcctggcgtcc
tcgctcatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgtccgaggaacctgatgccggtccatggc
gaatggcgccacctgcgcgccaacgcggaattgggtgccatgaccggcgtcccgcacgac
cgcatcgtcatcgccgaggacggcgtggccgtcgacctggtcgagggcaaggcgaagatc
tccggcaaggtgcaggccggctacgtgtacgtcgacggcctctcggtcggcgacgtgggc
gagccggcccttaaggaccgcaagatcctcggtgacgagggcatcatctcggtcttcgtg
gtcatcgacgcctccaccggcaagatcacgggtggtccgcacatccaggcccgcggctcg
ggcatcgatgactccgccttcggcgacgtgatcccccggatcacggacgtcctggagcgc
tccgcccaggacggcgtcgtcgagccgcaccagatgcagcagttggtccgccggaccctg
ggcaagtgggtctccgacacctaccggcgcaggccgatgatcctccctgtcgtcgtggag
gtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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