KEGG   Spirosoma linguale: Slin_3329Help
Entry
Slin_3329         CDS       T01156                                 

Definition
(GenBank) DEAD/DEAH box helicase
  KO
K11927  
ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
sli  Spirosoma linguale
Pathway
RNA degradation
Brite
KEGG Orthology (KO) [BR:sli00001]
 Genetic Information Processing
  Folding, sorting and degradation
   03018 RNA degradation
    Slin_3329
Enzymes [BR:sli01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     Slin_3329
Messenger RNA biogenesis [BR:sli03019]
 Prokaryotic Type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Slin_3329
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
UniProt: 
Position
complement(4025998..4027140)
Genome map
AA seq 380 aa AA seqDB search
MPFSELGLSKPLIKAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPIL
ELFQRKSVARNRYIKALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMM
ALRDAEIVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRHR
QTILFSATLGDAIEDINKNLLRNPVKIEVVEEEQNLDLIKQTAYRVDAERKGPLLRYLIK
EGKMKQVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLTVLVA
TDLISRGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLICPEDEHHFKIIQ
KKMGKRVEILETTDLNLMGY
NT seq 1143 nt NT seq  +upstreamnt  +downstreamnt
atgccattttcagaactcggtttatcaaagccccttattaaagccatagcctcccagcat
tacccgaagccgtatcccattcagcaggaggccattccggctattttgcaggggaaggat
attctgggtattgccaaaacgggttcggggaaaaccgccagttttgtcctccctattctg
gaactgtttcaacggaaaagcgtagcccgaaaccgatatattaaagcgctggcactcgtc
ccaacgcgtgaactggccgttcaggtggccgaagtttttcaaacgttcagtgcaaacttg
cctcgtaaagtgaaaacagtggcggtatttgggggcgtatccattaatccgcagatgatg
gccctccgggatgccgaaatcgtggtggctacgcccggccggttactggacctgatggcg
tctaacgcgcttcaactcacagacgttgatatcctcgtgctggacgaagccgataaaatg
ctcgatcttggctttgaagaggaaatggaacggatcttcgaccgactgccgcgccaccgg
caaacgattctcttctccgccacactgggcgacgctattgaggacattaacaaaaaccta
ctgcgaaatcccgtaaaaattgaagtagttgaggaggagcagaatctcgatttgattaaa
caaacagcctatcgtgtcgacgctgagcgcaaagggccgctgctacgttacctcatcaaa
gaaggaaaaatgaagcaggtattagtcttcgtctcgtctacccgaacggccgataatgtg
gtggttaaactcaataagaacggtattcatgcagctgccattcacagcggcaaaacgcag
ggtgcccgtaccgatgcgctcaccaagttcaaaggggggcacttaaccgttcttgttgct
accgatttgatttccagaggcattgatattcagttgttgccgcacgtaatcaacttcgaa
ttgccccgttcgcccaaagattacattcaccgaatcggccgaacgggccgtgccgaagcc
gaaggggaagccatttcgctgatttgcccggaggatgaacatcacttcaagatcattcag
aagaagatgggcaaacgggttgagatactggaaacgacggacctgaatcttatgggctat
taa

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