KEGG   Spirosoma linguale: Slin_5601
Entry
Slin_5601         CDS       T01156                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
sli  Spirosoma linguale
Pathway
sli03420  Nucleotide excision repair
sli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Slin_5601
   03430 Mismatch repair
    Slin_5601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sli03400]
    Slin_5601
Enzymes [BR:sli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Slin_5601
DNA repair and recombination proteins [BR:sli03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Slin_5601
   MMR (mismatch excision repair)
    Other MMR factors
     Slin_5601
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor Viral_helicase1 AAA_30 AAA_11 ResIII DUF3553
Other DBs
NCBI-GeneID: 8729375
NCBI-ProteinID: ADB41566
UniProt: D2QRY4
Position
complement(6816476..6818770)
AA seq 764 aa
MVDYISGLNDPQREAVMHGSGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFT
NKAAGEMRNRIEKVVGTEARNIWMGTFHSVFAKILRIEAKAIGYTSNFSIYDTDDSKSLL
RSIVKEMALDDKVYRVNSVFSRISGAKNRLIGPEDYINNAVIQADDESARMPHIGKIYKQ
YALRCFAANAMDFDDLLFNTNVLFRDHLDILHKYQHKFQHVMVDEFQDTNVSQYLITRKL
AAVHQNICIVGDDAQSIYAFRGANIENILNFQRDYGKENVKIVKLEQNYRSTKTIVEAAN
SIISRNKNQLEKSVFTANEDGPLIDLIKASSDNEEGRLVASSIFEAKMNESLTNNDFAIL
YRTNAQSRAFEEALRKVSIKYRIIGGLSFYQRKEIKDLIGYLRFTVNQQDEEAFKRIINL
PKRGIGDTTVAKISVIAAEKQESIWEIVANIGQHVAGRSAIPIEGFANLIKSYKLLLDQK
DAFEVASHIAKTSGLLKELYDDKTVEGLARYENVQELLNAIKEFVDNPDNEEKSLSAFLQ
SVSLLTTADEKEDDGDNDKVTLMTIHAAKGLEFKNVHIVGLEEDLFPSQMMLESRSDLEE
ERRLFYVAITRAEKRLTVSYAETRYHYGRLKMCEPSRFLMEIDQKYMKMSKLRSAPSRTD
FDRPERDRSESTSTGSMSFVRSLAQKTARSQAPQPTVSHTPSADFAPTSTAELAAGQRVE
HAKFGFGTVKAVDVNGTERKATIAFEKAGEKVLLLSFAKLRVVA
NT seq 2295 nt   +upstreamnt  +downstreamnt
atggttgattatatttcaggattaaatgacccccagcgggaagccgtgatgcacggcagc
ggcccgctgatgattatagccggagcgggttcggggaaaacccgcgtattgacgtaccgc
attgctcacctgatcgaaaacggcgttgacccgttccgcattctgtcgctgacgtttacc
aacaaggcggccggcgagatgcgcaaccgaattgaaaaggtagtcggtaccgaagcccgc
aacatctggatgggcacgttccactccgtttttgccaagattttacgcatcgaagccaaa
gccattggctataccagtaacttctccatttacgataccgacgactccaagtcgctcctg
cgcagtattgtgaaagagatggcgctggatgataaagtgtaccgggtcaacagcgttttt
agccgtatatccggcgccaaaaaccgcctgatcggaccggaagactacatcaataatgcg
gttattcaagccgacgatgaatccgcccggatgccgcatattggcaagatctacaaacag
tacgcgctgcggtgttttgccgccaacgccatggatttcgacgatctgctgttcaacacc
aatgtgctgttccgcgatcatctggatatactgcacaagtaccagcacaagtttcagcac
gtgatggtcgatgagtttcaggatacgaacgtttcccaatacctcatcacccgtaaactg
gccgccgttcatcagaacatctgtatcgtaggcgacgatgcccagagtatctacgccttc
cggggtgctaacatcgagaacatcctcaacttccagcgcgattatggcaaagaaaatgtc
aaaatcgtaaagctggaacagaactaccgttctaccaagacgattgtagaggccgcgaac
tccattatttcccggaataaaaaccaactggagaaatcagtctttacggccaatgaagac
ggaccgctcatcgacctgatcaaagcctcgtcggataacgaagaagggcgactggtagcc
tcgtccattttcgaagcgaagatgaacgagtcgctgacgaacaacgatttcgccattctg
taccggaccaacgcccagtcgcgggcctttgaggaagccctgcgtaaagtgagcattaag
taccgtatcatcggcggtctgtcgttctaccagcggaaagaaattaaggatttaattggc
tacctgcgttttacggtcaatcagcaggacgaggaagcgttcaagcggattatcaacctc
cccaagcgtggtatcggtgacacaaccgttgcaaaaatcagtgttattgcggccgagaag
caggaatccatctgggagattgttgccaacattggtcagcacgtggccggtcgctcggcg
attccgattgaagggttcgcgaatttgatcaagagctataaactgctgctcgatcagaaa
gatgcgtttgaggtagcctcgcacattgccaaaacgtcgggtctgctcaaagaactgtac
gacgacaaaaccgttgaagggctggcccggtacgaaaacgtgcaggaattgctgaacgcc
atcaaggaatttgtcgacaatccggataacgaggaaaagagcctgagtgcatttcttcag
tccgtttcgctgctaaccaccgccgacgaaaaagaggacgatggcgacaatgataaggtg
acgctgatgaccatccacgcagccaaaggccttgagttcaaaaacgtccatattgttgga
ctggaagaagatttattcccgagccagatgatgctcgaaagccgcagcgatctggaagaa
gaacggcgtctgttttacgtagccattacccgcgccgaaaaacgcctgacggtatcgtac
gccgaaacgcgttaccattacggccgactgaaaatgtgcgaaccaagccggtttctgatg
gaaatcgaccagaagtacatgaagatgtctaaacttcggtcggcaccaagccggacagat
ttcgaccggcctgaacgcgaccgtagtgaaagcacgtcgacgggatcgatgagttttgtt
cggtcgctggcacagaaaacggcccgttcgcaggcgccccaaccaacggtttcgcacacg
ccctccgccgactttgcgcctaccagcacggccgaactggcagcgggccagcgggtcgag
cacgcgaaattcgggtttggcacggttaaagctgtagatgttaatggaacagagcgtaaa
gcaacgattgccttcgagaaagcgggtgagaaagtgctactgctgagtttcgcgaagctg
cgggtagtggcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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