KEGG   Spiroplasma litorale: SLITO_v1c01050
Entry
SLITO_v1c01050    CDS       T04047                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sll  Spiroplasma litorale
Pathway
sll03030  DNA replication
sll03410  Base excision repair
sll03420  Nucleotide excision repair
sll03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sll00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SLITO_v1c01050 (ligA)
   03410 Base excision repair
    SLITO_v1c01050 (ligA)
   03420 Nucleotide excision repair
    SLITO_v1c01050 (ligA)
   03430 Mismatch repair
    SLITO_v1c01050 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sll03032]
    SLITO_v1c01050 (ligA)
   03400 DNA repair and recombination proteins [BR:sll03400]
    SLITO_v1c01050 (ligA)
Enzymes [BR:sll01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SLITO_v1c01050 (ligA)
DNA replication proteins [BR:sll03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SLITO_v1c01050 (ligA)
DNA repair and recombination proteins [BR:sll03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SLITO_v1c01050 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SLITO_v1c01050 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SLITO_v1c01050 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SLITO_v1c01050 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH 5_3_exonuc LysW-like_globular
Other DBs
NCBI-ProteinID: AKX33773
UniProt: A0A0K1W0T8
Position
119430..121433
AA seq 667 aa
MQNIKNKINQIKELLKSWEYAYYVLDDPIVEDSEYDFKLNELKQLELEYPELITADSPTQ
RVGGQISENFEKYNHKFPMLSLDNAFNDNDLYDFDKTIKKETINENYTYFVEPKIDGLSI
SLIYQNGIFIKGVTRGNGIQGEDVTFNIKTIRSLPLSINDKEDYFEVRGEVFLSKKEFQR
INDERKKNNEELFANPRNAAAGTLRQLNSKIVASRKLDVFLYYYLNREKIKTHSDSLDYI
KNIGFKVNPLGKLCKNINEVIKHISYIESVRQDLDYEIDGAVVKVNEFKYYDDIGYTSKF
PKWATAYKYPAEVKITNLKEIFATVGRTGKITYNAILEPVSLAGTTVQAATLHNAEYIFT
KKIRVGANVKVKKAGDIIPEIIEVVNDEIYSNLKTWEKIEQCPACGSDLEIFSDEVDQYC
INFNCERKIIKSLEHFVSRGAMNIEGMSIKIIEKLYENKIINNVTDIYNLKSKKNEILSL
EKTGEKSFSNLINAIEESKKNDASKLLFGLGIRYVGSKTSKLLLDKFKSIQTLMSADITE
IESIHDVGPKVAKSIQDWKKIDSNIILIQKLSELGINMNSLKQIVKENKNIKDKSFVITG
TLSKPRNNFVELIEINGGKVLNSISKITNFLLAGDDAGSKLDKAKDLQVNIINELEFLQM
LEGNNEN
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgcaaaatattaaaaataaaataaatcaaataaaagaattgttaaaatcatgagaatat
gcatattatgttttagatgatccaattgttgaagactcagaatacgattttaaattaaat
gagttaaagcaattagagttagaatatccagaacttattaccgctgactctccaactcaa
agagttggtggacaaatttcagaaaactttgaaaaatataatcataaatttcctatgttg
agtttagacaatgcatttaatgataatgatctatatgattttgataaaacaattaaaaaa
gaaacaataaatgaaaactatacgtactttgtagaacctaaaattgatggactatcaata
tctttaatctatcaaaatggaatatttataaaaggtgttactaggggtaatggaattcaa
ggtgaagatgttacatttaatataaaaacaattagaagtttgccgctttcaataaatgat
aaagaagattattttgaagttagaggagaagtttttttatcaaaaaaagagtttcaaaga
ataaatgatgaacgaaaaaaaaataatgaagagttatttgcaaatccaagaaatgctgct
gctggtactttaagacaattaaactctaaaattgttgcttcaagaaagttagatgttttt
ttatattattatttaaatcgtgaaaagattaaaacccattctgactctctagactatata
aaaaatattggttttaaagttaaccctcttgggaaattatgtaaaaatataaatgaagtt
ataaaacatattagttacattgaaagcgtaagacaagatttagattatgaaattgatggt
gcagtagtcaaagtaaatgaatttaaatattatgatgatataggatatacatctaagttt
cctaaatgagcaactgcatataaatacccagcggaagttaaaataacaaacttaaaagaa
atatttgcaacagttggaagaactggaaaaataacttacaacgcaattttagagccagta
agtcttgcgggcacaactgttcaagctgccactttacataatgcagaatatatttttaca
aaaaaaattagagttggtgcaaatgtaaaggtaaaaaaagctggtgacataataccagaa
ataattgaagttgttaatgatgaaatttattcaaatctaaaaacttgagaaaaaattgaa
caatgccctgcttgcggatctgatttagaaatatttagtgatgaagtagatcaatattgc
ataaactttaattgcgaaagaaaaattattaaaagtttggaacattttgtttcaagagga
gcaatgaatattgaaggcatgagtattaaaataattgaaaaattatacgaaaataaaata
attaataatgtaactgatatatataatttaaaatctaaaaaaaatgaaatattaagtctt
gaaaaaactggtgaaaaatcttttagtaatttaataaatgcaattgaagaaagtaaaaaa
aatgatgcaagtaaattattgtttggacttggaatcagatatgtaggaagtaaaacttca
aagttattgttagacaaatttaaaagtatacaaacacttatgtcggcagatatcactgag
attgagtctattcatgacgttggaccaaaggtcgcaaaatcaattcaagattgaaaaaaa
attgacagcaacattattttaattcaaaaactttctgaacttggaataaatatgaactct
ttgaagcaaatagttaaagagaataaaaatattaaagataaaagttttgttataactggt
actttaagtaaacctagaaataattttgtggagttaattgaaattaacggaggaaaagtg
ttaaactcaataagtaaaataactaattttttacttgcgggtgatgatgctggaagcaaa
ttagataaagcaaaagatttgcaagttaatataattaatgaattggagtttttgcaaatg
ttggagggaaataatgaaaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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