KEGG   Stenotrophomonas sp. LM091: BIZ42_09330
Entry
BIZ42_09330       CDS       T04630                                 
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
slm  Stenotrophomonas sp. LM091
Pathway
slm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:slm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BIZ42_09330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slm03400]
    BIZ42_09330
Enzymes [BR:slm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     BIZ42_09330
DNA repair and recombination proteins [BR:slm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BIZ42_09330
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 Helicase_RecD UvrD-helicase AAA_22 UvrD_C SH3_13 nSTAND3 AAA_33 Herpes_Helicase T2SSE SLFN-g3_helicase AAA_16 DEAD Mg_chelatase AAA_28 AAA_29 NACHT NTPase_1 SRP54 AAA_24 KTI12 AAA_7 ATPase
Other DBs
NCBI-ProteinID: AOX62388
UniProt: A0A1D8YA10
Position
complement(2140331..2142226)
AA seq 631 aa
MSLLTTLYRGNVLRTLDHALAQSLRRLRPDTPDAVLVGAALASLAVSEGHAGLDPTQPQR
LIEVDVDWPAPEAWLAQLQASPWVEVPGAEDVVAGDAPLVLENGLLYLRRYREYERRLAE
GLQRIATHPLPDADPGTLATLFGQLFPQAHDGIDHQARAAAVALRHPLVLVTGGPGTGKT
TTIARLLVLLAAQAVQADQALPRVALAAPTGRAAERMAESLRLAVQRLRLVGIAPALCDA
MPSTGTTLHRLLGVIPDSPRFRHHPDNPLPYDVVVVDEASMIDLPLMTKLVEAVADGTRL
VLLGDPDQLPSVEAGDVLSAILRASGDGLGTQADDAQALRVLLAPDALQPLAPPRRFAGR
RVQLQRGYRQTDALDLAPLAHAVRNGNSATALALLRTGTLAGVHFHEDQSDPLQHHREQL
LGHWRGLGEAADPGAALANAGRIRLLTAVREGPQGARGLNARIEALLAGVPRPGMAPGYF
HGRLLLITENSYRHRLFNGDIGICLIDRHGSVTAWFPGETPDQPRGFHPGALPAHESAFA
MTVHKAQGSEFDEVWLQLPRRDNRVLSRELIYTGMTRARQALHVLGSAEVLEAALARHAS
RLSGLAARLQGREGSTVADAVVAAPAQGQLF
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgagcctgctcaccacgctctaccgtggcaacgtgcttcgcacgctggaccatgccctg
gcgcagagcctgcgcaggctgcgccctgacacgcccgacgcggtgctggtcggtgccgca
ctggcctcgctggcggtctcggaaggacacgccggcctggatccgacccagccgcagcgc
ctgatcgaggtcgatgtcgactggccggcacccgaggcgtggttggcgcagctgcaggcg
tcgccgtgggtggaggtacccggcgcggaggacgtggtcgctggcgatgcaccgctggtg
ctggagaacggcctgctctatctgcgtcgctaccgcgaatacgaacgtcggcttgccgag
ggcctgcagcgcatcgccacgcatccgctgcccgacgccgatcccggcaccctggccacg
ctgttcggccagctgttcccgcaggcccacgatgggatcgatcaccaggcccgcgccgcg
gccgtcgcgctgcgccatccactggtgctggtgaccggcggccccggcaccggcaagacc
accaccatcgcgcggctgctggtgctgcttgccgcacaggcggtgcaggccgaccaggca
ttgccacgggtcgcgctcgccgcgcccaccggccgcgcggccgagcgcatggccgagagc
ctgcgcctggccgtgcagcggctgcgcctggtgggcatcgcaccggcgctgtgcgacgcg
atgccgagcaccggcaccaccctgcatcggctgctcggggtgatcccggattcgccacgc
ttccggcatcaccccgacaacccgctgccgtacgacgtggtggtggtggacgaggcctcg
atgatcgacctgccgctgatgaccaagctggtcgaggcagtcgccgatggcacccggctg
gtgctgctcggtgatccggaccagctgccctcggtggaagccggcgatgtgctcagcgcc
atcctccgtgccagcggcgatggcctgggtacccaggctgacgatgcccaggcgctgcgc
gtgctgctcgcccccgatgccctgcaaccgctggcaccgccacgccggttcgccggccgg
cgcgtgcagctgcagcggggctatcggcagaccgacgcgctcgatctggcgccgctggcg
catgccgtgcgcaacggcaacagcgccaccgcgctggcactgctgaggacgggtacgctg
gccggtgtgcacttccacgaagaccagagcgatccgctgcagcatcaccgcgagcagctg
ctcgggcattggcgcggcctcggcgaagccgccgatcccggcgctgcgctggccaatgcc
ggccgcatccgcctgctcaccgccgtgcgcgaaggcccgcagggcgcacgcgggctcaat
gcccgcatcgaagcgctgctggccggtgtgccgcggccgggcatggcgccgggttacttc
cacggccggctgctgctgatcaccgagaacagctaccggcaccgcctgttcaacggcgac
atcggcatctgcctgatcgatcgccacggcagcgtgaccgcgtggttccccggcgaaacg
ccggatcaaccgcgtggcttccacccgggtgcattgccggcgcacgaaagcgcgttcgcg
atgaccgtgcacaaggcgcagggctcggagttcgatgaggtctggttgcagctgccgcga
cgcgacaaccgcgtgctgtcgcgcgagctgatctataccggcatgacccgcgcgcggcag
gcgctgcatgtgctgggcagtgcggaggtgctggaggccgcattggcgcggcacgccagc
cggctgtcaggtctggctgctcgcctgcagggccgcgaggggagcacagtggccgacgcc
gtcgtggcggcgccggcccaggggcagttgttctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (27)   
   Pfam (27)   
All databases (37)   

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