KEGG   Staphylococcus lugdunensis N920143: SLUG_16320
Entry
SLUG_16320        CDS       T01951                                 
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
sln  Staphylococcus lugdunensis N920143
Pathway
sln03030  DNA replication
sln03430  Mismatch repair
sln03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sln00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SLUG_16320 (polC)
   03430 Mismatch repair
    SLUG_16320 (polC)
   03440 Homologous recombination
    SLUG_16320 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sln03032]
    SLUG_16320 (polC)
   03400 DNA repair and recombination proteins [BR:sln03400]
    SLUG_16320 (polC)
Enzymes [BR:sln01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SLUG_16320 (polC)
DNA replication proteins [BR:sln03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SLUG_16320 (polC)
DNA repair and recombination proteins [BR:sln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SLUG_16320 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T DNA_pol3_finger PHP DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 HHH_3 tRNA_anti-codon RNase_H_2 T2SSK YhfH Ribosomal_S19e
Other DBs
NCBI-ProteinID: CCB54123
Position
complement(1711348..1715664)
AA seq 1438 aa
MAMTNQEKFKVLADQIKIANQLEQDIIEQGELMRIDVSKKNRTWDFQIKLPRFLSKEDYL
IFTHAIVEEFKEIATVQWHFTIADTHNQDEFAIKYFDYCIDQTALSPKVKGQLKQKSLIM
SGDVLKVMVSNDVERNHFDKVCNGSLVKAYQQCGFDINKVVFETDHSHQDENLASLEAHI
QQEDEQSAREATEKLEKMKAEKAKQQDNNESTVSKCQIGKTIQVENIRTIESIVEEEFKV
AIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLDHFKALSVGKWIRAQ
GRIEEDSFVRDLVMMMSDIEEIKKTPKQDKSKEKRVEFHLHTAMSQMDGIPNINSYVAQA
AEWGHKAIAVTDHNGVQAFPDAHSAAEKHGIKMIYGMEGMLVDDGVPIAYKPTNRDLKDA
TYVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDKFERFSNPHQKLSETIINLTHITDDM
LTDAPEIDEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERIGFGPSTNGVIDTLELSRT
INTEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMLQQMKELGVSNHKDINKKL
SNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSASLVKYYYRTPRIPRSLLDEFREGLLIG
TACDEGELFTAVMQRDQSEVEKVANYYDFIEVQPPALYQDLLDRELIRDTATLHEIYQRL
LKAGEQANIPVIATGNAHYLNEHDGIARKILIASQPGNPLNRSTLPKAHFRTTDEMLDEF
HFLGEEKAYEIVVKNTNALADRIERVVPIKDQLFTPRMEGANEEIRELSYSNAKKLYGED
LPQIVIDRLEKELASIIGNGFAVIYLISQRLVKKSLEDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYICPQCKTSEFFNDGSVGSGFDLPDKKCETCGSELIKEGQDIPFETFLGFKG
DKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHK
RGAEIDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQNSAWMTTHFDFH
SIHDNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMKIFSSPETLGVTEEDILC
KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELVRSGICDLSG
VIGCRDDIMVYLMYAGLEPSMAFKIMESVRKGKGLTDEMIETMKENNVPDWYLDSCLKIK
YMFPKAHAAAYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDM
YARYMELGKKEKDVLTVLELVNEMAHRGFSMQPISLEKSQAFDFIIEGDSLIPPFIAVPG
LGENVAQRIVEARSEGPFLSKEDLNKKAGLSQKIIDYLDDLGSLPDLPDKAQLSIFDM
NT seq 4317 nt   +upstreamnt  +downstreamnt
ttggcaatgacaaatcaagaaaaatttaaagtacttgctgaccagattaaaatagctaat
cagcttgagcaagatattatagaacaaggcgaattaatgcgtatagatgtttcgaaaaag
aacagaacttgggatttccaaattaagttaccacgttttttatctaaagaagactatctt
atctttacacacgcaatagtcgaagaatttaaagaaatagcaactgtacagtggcatttt
actattgctgatactcataaccaagatgaatttgcgataaaatattttgattattgtatt
gatcagacagcattatctccaaaagttaaaggacagttaaagcaaaaaagcctaattatg
tcaggcgatgtcttgaaagtgatggtttctaatgatgtcgaaagaaatcactttgacaaa
gtttgtaatgggagtttggtaaaggcatatcagcagtgtggttttgatatcaataaagtt
gtttttgaaacagatcatagtcatcaagatgaaaacttagcatcacttgaagcacatatt
caacaagaggatgaacaaagtgcacgtgaagctacggaaaaacttgaaaaaatgaaagca
gaaaaagcgaaacaacaagacaataacgaaagtaccgtttctaagtgtcaaattggaaaa
acaatacaagttgaaaatattagaactatcgaatcaattgttgaagaggaatttaaagtt
gcaattgaaggggttatttttgatataaatttaaaagaacttaaaagtggtcgtcacata
gtcgaattaaaagttactgattacacagactcattagtattaaagatgttcacacgtaaa
aacaaagatgacttagatcactttaaagctttaagtgtcggcaagtggatacgtgctcaa
ggacgcattgaggaagatagttttgtcagagatttagttatgatgatgtctgatattgaa
gaaattaaaaaaacacctaaacaagataaatcaaaagagaagcgcgtagaatttcattta
catactgcaatgagtcaaatggatgggatacctaacattaatagttatgttgctcaagca
gccgaatggggtcacaaagcgatagcagtgacggatcacaacggtgttcaagcatttcca
gatgcgcatagtgcagcagaaaagcatggcataaagatgatttatggaatggaaggtatg
ttggtagacgatggtgtgcctattgcatataaacccacgaatcgtgacttaaaagatgct
acttatgtagtgtttgacgttgaaacaacgggtttatccaatcaatatgatcaaatcatt
gagttagcggctgttaaagtttatgatggtgaaattattgataaattcgaacgttttagc
aatccacatcaaaaattatcagaaacaattattaatttaacgcatattacagatgatatg
ttgacagatgcacccgaaattgatgaagtattgacagaatttaaagaatgggttggggat
gctattttcgtagcacacaacgcttcttttgacatgggctttattgacaccggatatgag
cgcataggttttggaccttcgaccaatggagtaatcgatacgcttgaattatctagaacg
attaatacagaatatggtaaacatggattaaactttttagctaaaaaatatggtgtcgaa
cttacgcaacatcatagagcaatttatgatactgaagctactgcatatatttttattaag
atgcttcaacaaatgaaagaattaggtgtatcaaatcataaagacatcaataagaagttg
tcgaatgaggacgcgtataaacgtgcacgtccatctcatgtcacactgattgtccaaaac
caagaaggacttaaaaatctctttaaaattgttagtgcatcattggtcaaatattattat
cgtacacctcgtattccaagatctctacttgatgaattccgtgaaggtctattaattggc
acagcatgtgatgaaggtgaattatttacagctgtaatgcaacgcgatcaatcggaagtt
gaaaaagttgcgaactattatgattttatcgaagttcaaccacctgcattgtatcaagat
ttacttgatcgagagttaatccgtgacacagcgacgttacatgagatttaccaacgtttg
cttaaagcaggagaacaggccaatatacctgttattgcaacaggtaatgcccattactta
aatgaacatgatggcatagcgcgtaaaatattaatcgcttcacaaccaggtaacccattg
aatcgttcaactttacctaaagcacattttagaacaactgatgaaatgttagatgaattt
catttcttaggagaagaaaaggcatatgaaatcgtcgttaaaaatacaaatgctttggct
gatcgcattgaacgtgttgtaccgattaaagatcagttatttactccaagaatggagggt
gcaaatgaagaaatacgtgaattaagctatagtaatgccaaaaaattatatggtgaagat
ctaccacaaattgttattgatcgacttgaaaaagagttagccagtattatcggtaatggt
ttcgcagttatatatttaatctctcagcgacttgttaagaaatctttagaagatggatat
ctagtgggatcaaggggatcagtaggatcaagcttcgtagcaacaatgactgaaattaca
gaagttaatccgctacctccgcactatatatgtccacagtgtaaaacgagtgaattcttt
aatgatggatctgtaggttctggctttgatttaccagataaaaaatgtgaaacatgtggc
agtgaattaattaaagaaggtcaagatattccatttgaaacattcttaggattcaaaggt
gacaaagtacctgatattgacttgaattttagtggtgaatatcaaccaaacgcgcataac
tatacgaaagttcttttcggagaagacaaagtatttcgtgcagggactataggtacagtt
gctgaaaaaactgccttcggatatgttaaaggctatttaaatgatcaaggaattcataag
cgtggtgctgaaattgatcgtttagttaaaggatgtacaggagtaaaacgtacgactgga
caacatccggggggcattattgttgtaccagattacatggatatctatgattttacgcca
attcaatatccggctgatgatcagaattcagcatggatgacgacacactttgattttcat
tctatacatgataatgtcttaaaacttgatatactagggcacgatgatcctaccatgatt
cgtatgttgcaagatttatcaggtattgacccgaaaacaattccagttgatgataaagaa
acaatgaaaatttttagtagccctgaaacgctaggtgtgacggaagaagatattttatgt
aaaacagggacgtttggggtacctgaatttggtacaggatttgtaagacagatgcttgaa
gatacaaaaccaactactttttcggagttagtacaaatttcaggattgtctcatggtaca
gatgtatggttaggtaacgcccaagaactagtgcgaagtggtatatgtgatttatcgggt
gtgataggttgccgtgatgatatcatggtgtacttaatgtacgccggactagaaccatct
atggcatttaaaataatggaatccgtacgtaaaggtaaaggattaaccgatgagatgatt
gaaaccatgaaagaaaataatgtaccagactggtatttagattcatgtttgaaaattaag
tacatgttccctaaagcacatgcggcagcatatgttttaatggcagtacgcattgcttac
tttaaagtacatcatccattgtattattatgcagcatattttacgattcgtgcatctgat
tttgatttaatcacgatgattaaagataaagaaagcattaaaaatactgttaaagatatg
tatgcacgctatatggaattaggtaaaaaagaaaaagacgtattaacagtgttagagtta
gtgaatgagatggctcatagaggctttagtatgcagccgattagtttagagaaaagccag
gcatttgattttattatcgaaggtgattctttaattccaccatttattgcagttcctgga
cttggtgaaaacgttgcgcaacgtattgtagaggcgcgtagtgaaggtcctttcttatca
aaagaagatttaaataaaaaagctggcttatcacaaaagattattgattacttagatgat
ttgggttctttaccagatttaccagataaagcacagttatctatatttgatatgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (25)   

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