KEGG T00489: Shew

Shewanella loihica: Shew_2131

Entry

Shew_2131 CDS T00489

Definition

exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

slo Shewanella loihica

Pathway

slo03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:slo03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Viral_helicase1 Helicase_RecD AAA_11 AAA_22 PhoH UvrD-helicase DUF2075 AAA_28 AAA_16 Flavi_DEAD DEAD ArgK AAA_25 T2SE AAA_17 FtsK_SpoIIIE NTPase_1 SRP54 UvrD_C AAA_23

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2476060..2478048

AA seq 662 aa
MIQLAQPLSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTC
LPLTQIDKNNPLHEQQPQCQLELTPQALAGQLTQYQAISPADGELNTPLILDGDRLYLQR
YYQFETQVAERLTRLNQPITVAAPDKVACILNILFAGQAEKPDWQKVATATAFSQKLAVI
TGGPGTGKTTTVTKLLLLLCLEQQLTIKLVAPTGKAAARLSESIKASKARLAQELAPYGD
ELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLRLDLLILDEASMVDLPMMHKLL
EALPEHTRLILLGDQDQLASVEAGAVLADICAGLKQTSSQESGWRMRYSQEKAALLSQLT
NEDLSNYIDARPALGDSLAMLMHSHRFKGDAGIGQLAGAVNRRDLTGILSVWQKGYDELS
WLEHQLSPQGNAGLKALMAQSVDKYRPYLDLVGHLANKEQAQEVDKEADQQLDLDEIANQ
IITRFNNFRILCAMRAGEYGVEGINAAVTQALKDAQLIQPSSEFYAGRPIIIQSNDYNLG
LFNGDIGVILPGHGPTHRLMAYFVQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFQQV
AFVLPPRPSVAQRQLLTKELVYTAITRAKGHFSCLGSQAVFEAACSQVTLRASGLAQRLW
PA

NT seq 1989 nt +upstreamnt +downstreamnt
atgatccagctagcacagccacttagccagctgcttaagcactggcagcaggagggactg
ctgaccccattggatcgccactttgccctgcagatgcaagccctgcacagcgatggcgac
gatctctttaccttgatctgcgccctgctcagccgtcaactatcccagcaacacacctgt
ctgcccctgacgcagatagacaagaataacccgctgcatgaacagcagccccaatgtcaa
cttgagctgaccccacaggcgctggccgggcagttgacgcaatatcaagccattagtccg
gccgatggtgagctaaacacccccttgatcctcgatggcgacaggctctacctgcagcgt
tactaccagtttgagactcaggtggccgagcgtctcacgcgcctcaatcagcccatcaca
gttgcggcgccagataaggtagcctgcatactgaatattctgtttgccggtcaggccgag
aagcccgattggcagaaggtagccaccgccaccgcctttagccagaagctggcggtgatc
accggcgggcccggtacgggcaagaccaccacagtaactaagctgttactgctgctctgt
ctggagcagcaactcaccatcaagttggtggcgccaacgggcaaggcggccgcgcgcctg
agcgagtcgatcaaggcctccaaggcgaggcttgcccaggagctggcgccctatggcgat
gagttagatcttgagcagcttaagcaggtgccagaagaggcagccaccctgcaccggcta
ctgggggtgatccccggctcccacagattcaggcaccacaaggacaatcctctcaggctg
gatctcttgatcctcgatgaggcctccatggtggatctgcccatgatgcacaagctgctg
gaagcgctgccggagcacaccaggcttattctgcttggcgatcaggaccagctcgcctcg
gtcgaggccggcgccgtgctggctgatatctgcgccgggctaaaacagacaagctcacag
gaaagtggctggcgcatgcgctactcacaagagaaggcagcactcctgagtcaactgacc
aatgaagatctcagcaactatatcgatgcgcgcccggcactgggcgatagtctggccatg
ctgatgcacagccacagatttaagggcgatgccggtatcggacaactagctggcgccgtc
aaccgccgcgatctgacgggcatattaagtgtctggcagaaaggatacgacgaacttagc
tggcttgagcatcaactctcgccccagggcaacgccggactcaaggccttgatggcacag
agcgtcgacaaatatcgcccttatcttgacttggttggtcacctggccaacaaagagcag
gctcaagaagtagataaagaggcagatcaacaactggatctggacgaaatcgccaaccag
atcatcactcgcttcaacaacttccgtatcctctgcgccatgcgcgccggcgaatatggc
gtcgaggggatcaatgcggcggtcacccaggcactgaaggatgcccagctgatccagcca
tccagcgaattttacgccggacgccctatcatcattcagagtaacgactataacctaggg
ctgtttaacggtgatatcggggttatcctgccaggtcatggccccacccaccgcctgatg
gcctatttcgttcaggccgatggcagcctgctcaaggtactgcccgctcgcctgcccagc
cacgagacctgttatgccatgacggtacataagagccagggcagtgagtttcagcaggtc
gccttcgtcttgccgccaaggcccagcgttgcccagcgccagctactgaccaaggagctg
gtctacaccgccatcacccgcgccaagggacactttagctgtcttggcagccaggcggtg
ttcgaagcggcatgcagtcaggtaacccttagggcctctggcctagcacagaggttgtgg
ccagcatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SLO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (33)   

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