KEGG   Shewanella loihica: Shew_3690Help
Entry
Shew_3690         CDS       T00489                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
slo  Shewanella loihica
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:slo00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Shew_3690
Enzymes [BR:slo01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Shew_3690
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Shew_3690
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
4394035..4394850
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGISPHLLDQQVTGLTVRNASLRWPVPEVAQQIVGQTIRGIRRRAKYLL
LDTDAGTTIVHLGMSGSLRILPKSTPVEKHDHIDLELASGKVLRFNDPRRFGAWLWCELP
EAAHPLLAKLGPEPLQSGFNVDYLAKALEGKKKAVKLCLMDNHIVVGVGNIYANEALFAA
GIHPQTEAGRIDRERLTVLVAEVKQILAQAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGETCTQCGNLLSEIKLGQRATVFCGLCQPR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaactcccagaagtcgaagtgacccgccaagggatctcccctcacctgctggat
cagcaggtcacaggattaaccgtgcgtaacgcctccctgcgatggcccgtccccgaagtt
gcccagcagattgtcggacagaccatcagaggcatacgccgccgcgccaaatatctgctg
ctggataccgatgccggcaccaccatagtccacctcggcatgtcgggcagcctgcgaatt
ctgcccaagtctacgccggtggagaagcatgaccatatcgatttggaactggccagcggc
aaggtgctcaggtttaacgatcccagacgcttcggcgcctggctctggtgcgagctcccc
gaagccgcccatcccctgctggccaaactaggcccagaacccctgcaatcgggcttcaat
gtcgactacttggccaaggcactggaaggtaagaagaaggcggtcaaactctgcctgatg
gacaatcatatcgtggtgggcgtagggaatatctatgccaacgaggccctgtttgccgcc
ggcatacacccacagaccgaggcgggacgaatcgatagggagcggcttaccgtgctggtt
gccgaggtgaaacagatcttggcccaggcgatcaaacagggcggtactacgctcaaagac
ttcaccaacgccgatggcaaacccggttatttcgcccagaagctacatgtctatggccgc
ggcggcgagacctgtactcaatgtggcaacctgctgagcgagataaaactgggccaaagg
gccacagtcttctgcggcctgtgtcagccacgttaa

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