KEGG T02740: M495

Serratia liquefaciens: M495_05975

Entry

M495_05975        CDS       T02740

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

slq Serratia liquefaciens

Pathway

slq03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:slq00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    M495_05975
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slq03400]
    M495_05975
DNA repair and recombination proteins [BR:slq03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     M495_05975
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      M495_05975

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 DUF87 SBDS_domain_II AAA_22 DUF4686 zf-C4H2

Other DBs

NCBI-ProteinID:

AGQ30002

Position

1277532..1279544

AA seq 670 aa
MSKTFKLHSEFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLAELQ
YSRNDQAFQRATFRVRGEVIDVFPAESDELALRIELFDEEVERLSLFDPLTGQIEQEVQR
FTIYPKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDIIDQVVRPTGLLD
PQIEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDKITDSMARAIGETERRRAKQQAFNEENGIVPQGLNKKISDILQLG
KPSTRSKGKGKGKAAENAAQYQNLTPKALDQKIRELEAQMYTHAQNLEFEQAAGLRDEIH
QLREQFIAIS

NT seq 2013 nt +upstreamnt +downstreamnt
atgagtaaaacgttcaaactgcattccgaattcaagccggccggcgaccagccggaagcc
atccgtaagctggaagagggccttgaagacggcctggctcaccaaacgctgctgggcgta
accggctcgggcaagacattcaccgtcgctaatgtgatcgccgatctcaaccggcccacc
atggtgctggcgcctaataaaactttggcggcgcagctgtatggtgagatgaaagagttc
tttcccgagaatgcggtcgagtatttcgtttcttactacgactactatcagccggaggcc
tacgtccccagctccgacacctttatcgaaaaagacgcctcggtgaatgaacacatcgag
cagatgcgcctttccgcgacgaaagcgctgttggaacgtcgcgatgtgatcgtggtggcg
tcggtatcggcgatctacggcttgggcgatccggatttgtacctgaagatgatgctgcac
ctgaccaaaggcatgatcatcgatcagcgggcgatcctgcgccgtttggcggagctgcaa
tatagccgcaacgatcaggctttccagcgcgcgacgttccgcgtgcggggtgaagtgatt
gacgtcttcccggccgaatcggatgaattggcgctgcgcatcgagctgtttgacgaagag
gtcgaacggctttcgctgtttgatcccctgaccggccagatcgaacaagaagtgcagcgc
tttaccatttaccccaaatcgcactatgtgacgccgcgtgagcggatcctgcaggcgatg
gaagagatcaaggtggatctggccgagcggcgcaaggtgctgttggccaataacaagctg
ctggaagaacagcgtctgacgcagcgcacccagtttgatctggagatgatgaacgaactg
ggctactgctccggcattgaaaactattcgcgctacctgtccggacgcggcgagggtgag
ccaccgccaacgctgttcgactatttgccggcagatggtctgctggtggttgacgagtcc
cacgtgaccattccgcaaatcggcggtatgtacaaaggcgaccgttcacgcaaggaaacg
ctggtggaatacggtttccgcctgccgtcggcgctggataaccgcccgctgcgctttgaa
gagttcgaagcgctggcgccacagactatctatgtgtctgctacgccgggcaaatacgag
ctggaaaaatccggtggtgacattatcgatcaggtggtgcgcccaaccgggctgctggat
ccgcaaatcgaagtgcggccggtgaccacccaggtggacgatctgctttccgaaatccgc
aagcgggtggcgatcaacgagcgtgtgctggttaccacgctgaccaaacgcatggcggaa
gatctgaccgaatacctggaagagcatggcgagcgggtgcgctacctgcactcggacatc
gataccgtggaacgggtcgaaatcattcgtgacctgcgcctgggcgagtttgacgtgctg
gtgggtatcaacctgttgcgtgaagggctggacatgccagaggtgtcgctggtggcgatt
ttggatgccgataaagagggcttcctgcgttccgaacgttcattgatccagaccattggg
cgtgcggcgcgtaacctcaacggtaaagctatcctctacggtgacaaaattaccgactcg
atggccagagcgatcggcgagaccgagcgtcgccgtgccaaacagcaggcgttcaacgaa
gaaaacggcattgtaccgcagggcttgaacaagaaaatttctgatattttgcagttgggc
aaacccagtacccgcagcaaaggcaaagggaaggggaaagctgcggaaaacgccgcccag
taccaaaatcttacgccaaaagcgctggatcagaagattcgcgagttggaagcgcagatg
tatacccacgcgcaaaacctggagttcgagcaggcggcgggcttgcgtgacgaaatccac
cagctgcgcgagcagtttattgccatttcataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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