KEGG   Serratia liquefaciens: M495_19675
Entry
M495_19675        CDS       T02740                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
slq  Serratia liquefaciens
Pathway
slq03030  DNA replication
slq03430  Mismatch repair
slq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:slq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M495_19675 (dnaE)
   03430 Mismatch repair
    M495_19675 (dnaE)
   03440 Homologous recombination
    M495_19675 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:slq03032]
    M495_19675 (dnaE)
   03400 DNA repair and recombination proteins [BR:slq03400]
    M495_19675 (dnaE)
Enzymes [BR:slq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     M495_19675 (dnaE)
DNA replication proteins [BR:slq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     M495_19675 (dnaE)
DNA repair and recombination proteins [BR:slq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     M495_19675 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AGQ32574
Position
complement(4105751..4109239)
AA seq 1162 aa
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYTAQQYM
RNEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLILKSKEGL
EDRLEFLFPDPEVRAQRRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKINRRILEKLIMSGAFDRLGPHRAAL
MNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq 3489 nt   +upstreamnt  +downstreamnt
atggccgaacctcgttttattcacctgcgcgttcatagcgactactccatgatagatgga
ttggccaagattgggccgttggtgaagagagccgccgcgttagccatgcctgctttggca
attaccgactttaccaacctgtgtggtctggtgaagttttatggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggattttcatgtgcaaagcgaagtgctgggcgatgag
ctggcgcagctcaccgtgctggccgccaataatgaaggttaccaaaacctgacgttgctg
atttcccgcgcttatcagcgtggttacggtgccgccggtccgactattgatcgggactgg
ttgattgagcaccgtgaagggctgattttgctctctggcgcgcgccagggggacgtcggc
aagtttctgctgcgcggcaaccagccgcaggtggagcagtgcctggagttctatcagcaa
tacttccctgacagctattacctcgaactgatccgtaccggtcggccggacgaagaaaac
tatctgcacgccgcagtggcgctggccactgaacgcggattgccggtggtggccactaac
gacgtgcgctttctggtcgaggatgactttgacgcccacgaaatccgcgtcgccattcat
gacggcttcacgctggacgatcccaagcgcccacgtaactatacggcgcagcaatacatg
cgtaacgaagacgagatgtgcgagctgtttgccgacatcccggaagcgttgctcaacagc
gtagagatcgccaagcgttgtaacgtgactattcgcctcggcgagtacttcctgccgcag
ttcccgaccggtgatatgagcaccgaggacttcctgatcctcaagtcgaaggaagggctg
gaagatcgcctggagttcctgttcccagacccagaggtgcgcgctcaacgccgccctgaa
tacgatgaacgtctggatattgaactgaacgtgatcaaccagatgggtttcccgggttac
ttcctgatcgtgatggagttcatccagtggtcgaaggataacaacgtgccggttggcccg
gggcgtggttccggtgccggttctttagtagcctatgcactgaaaatcaccgatcttgac
ccgttggaatttgacctgctgtttgaacgcttccttaacccggaacgtgtttcgatgccc
gacttcgacgtcgatttctgcatggaaaaacgcgatctggtgattgagcacgtggcggat
atgtacggccgtgaggcggtatcgcaaatcatcaccttcggtaccatggcggcgaaagcg
gttattcgcgacgtgggtcgcgtgctgggccacccctatggcttcgtcgaccgcatctcc
aaactggtgccgcccgatccgggcatgacgctggaaaaagcctttgccgccgaaccccaa
ctgccggaaatttacgaggccgatgaggaagtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtcacacgtaacgccggtaagcacgccgggggcgtggtgatcgcgccgacc
aaaatcaccgacttcgcgccgttgtattgtgacgctgaggggcagcatcctgttacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggcttgcgt
accctgaccatcatcgactgggcgttggaaatgattaacgcccggcgcgccaaaaccggg
ctggagccgattgatatcgccgccatcccgctcgaagacaaaaaaagcttcgacatgctg
cagcgttcggagaccaccgcggtcttccagcttgaatcgcgcggcatgaaggatttgatc
aaacgtctgaagcccgactgtttcgaagacatgatcgcactggtggcgctgttccgccct
ggtcctctgcagtcaggcatggtagacaactttatcgaccgtaagcacggccgcgaagaa
atttcctacccggatatccagtggcagcatgagtcgctcaagccggtgctggagccgacc
tacggcattatcctgtatcaagaacaggttatgcagattgcccaggtactggccgggtat
tcgctgggcggcgcggacatgctgcgccgtgcgatgggtaaaaagaacccggttgaaatg
gccaagcagcgtggcggtttcgaggatggggcaaaagcacgcggcatcgacggcgaactg
tcggtaaaaatcttcgatctggtggagaaattcgccggttatggcttcaacaagtcccac
tccgccgcctatgcgttggtgtcctaccagacgctgtggctgaaggcacactacccggcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgataaggtggtggggctg
gtggatgagtgctggcgtatggggctgaaaatcctgccgccggacatcaacagcggccag
taccatttccacgttaacgatgaaggcgagatcgtttacggtatcggcgccatcaaaggc
gtcggggaagggccgattgaagccattctggaggcgcgtaacagcggtgaacagggctac
tttaaagacctgttcgatctgtgcgcgcgctctgacatcaaaaaaattaaccgccgcatt
ctggaaaagctgatcatgtccggggcgttcgaccgccttgggccacaccgcgccgcattg
atgaactctttgcccgatgcgttaaaagcggcagatcagcatgccaaagccgaagcgatc
ggccaggtggacatgtttggcgtactggcggaagcgccggagcaagtggagcaatcctac
gccaacgtgccccgctggcaggagcaggtggtgctggacggtgaacgggaaacgttgggg
ttgtacctcaccggccacccaatcacccagtacctgaaggagatcgaacgctacgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgaccaccgccgttggg
ctggtgatcgcctcgcgggttatggtcaccaagcgcggtaaccgcatcgggatctgtact
ctggatgaccgctctggccgtctggaggtgatgttattcaccgatgcgttagaaaaatac
cagcatttattggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgaccgcccgcgagctaatggatatcagtgaagcccgtgaa
aaatacgctcgcggacttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtctttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttattgatagatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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