KEGG   Salinispira pacifica: L21SP2_0521
Entry
L21SP2_0521       CDS       T03013                                 
Name
(GenBank) Cold-shock DEAD-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
slr  Salinispira pacifica
Pathway
slr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L21SP2_0521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slr03019]
    L21SP2_0521
   03009 Ribosome biogenesis [BR:slr03009]
    L21SP2_0521
Messenger RNA biogenesis [BR:slr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     L21SP2_0521
Ribosome biogenesis [BR:slr03009]
 Prokaryotic type
  rRNA helicases
   L21SP2_0521
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 RecG_N
Other DBs
NCBI-ProteinID: AHC13953
UniProt: V5WDR9
Position
complement(564862..566715)
AA seq 617 aa
MTFSDFQLDERILSALTDMGFTEPTEIQQQALPLLMEHPARDFIGLAQTGTGKTAAFGLP
LLEVARAEETTPQALILSPTRELALQISDEMNKFSRNLTGIRITTVYGGASISDQIRELR
RGSQIVVATPGRLADLIRRKKIDIGNITNLVLDEADIMLNMGFKQELDEILEQTPSAKRV
ILLSATMPPEVARIAATYMENPSEVKVGTKNASADTISHNYCMVHSKDKYHALKRLLDSH
PEIYGIVFCRTKASTQHIAEHLIRDGYNSAPLHGDLSQAQRDQVMKNFRNGGTQILVATD
VAARGLDVDHLSHVIHYDLPDEPENYVHRSGRTGRAGRTGHSVAIINMKEKGKIRRIERS
MNGTIARMRVPDGQEICEHQLMHLVDRVHNVQVDESRIAKYMPIIEEKLAALDREELLKH
FVSLEFNRFLDYYKDAGDLNPSEHARESGRYDDRDGRRGRGRRDNADRGGRDRRDGRSDD
RRDGRRGSKEKPFSKDGPRAESFDIISVNVGRNDKVLPPQIIGMVNEATKLRHIEIGRID
IDSASSNMMVDSRYSSMVAGALDNYQYRGKTISAKIVSSGSGRKSGSGSAPSGGRSGRKG
GKRGGKRSEARKKSGRN
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgacgttttcagattttcaactggatgagcgcattctcagcgcactcacagatatgggg
ttcactgaacccacagaaattcagcagcaggccctgcctcttctgatggaacatcccgca
cgggattttatcggacttgcacagaccggcacgggaaaaaccgcagcattcggcctgccc
ctcctggaggtcgcccgggcagaggaaaccactccccaggcgctgattctttcccccacc
cgggaactggctctccagatcagcgatgaaatgaacaaattcagccgtaatctcaccggc
atcagaatcaccacagtatacggcggtgcaagcatcagcgatcagatccgggaactgcgc
aggggctcgcaaattgttgtggccacccccggccgccttgcggacctgattcgccggaaa
aagatagacatcggcaatattaccaatctggttctggatgaagcggacatcatgctcaat
atggggttcaaacaggaactggatgagattttggagcaaaccccttcggccaagcgggtt
attctgctttctgcaaccatgccgcctgaagtagcccggattgccgccacctacatggag
aatcccagcgaagtgaaggtgggcacgaaaaacgccagtgcggataccatcagccacaat
tactgcatggtacacagcaaagataaataccacgcattgaaacgcctgctggattcacac
ccggaaatttacggaatcgtattctgccgaaccaaggcaagcacccagcacattgcagaa
cacctgatccgggacggctataattccgctcccctccacggcgacctttcccaggctcag
cgggatcaggtgatgaaaaacttccggaacggcggaacccaaatcctggtagccaccgat
gttgctgcccggggcctggatgtggaccatctcagccatgtaattcattacgacctcccg
gatgagccggaaaactacgttcaccgaagcggacggacgggacgggccggcagaacggga
cactctgtggccatcatcaacatgaaggaaaaaggcaaaatccgcagaatcgaacggagc
atgaacggcacaatcgcccgcatgcgggtgcccgacggccaggaaatctgtgaacatcag
ctaatgcacctggtggaccgggttcacaacgtccaggtggatgaaagcaggattgcaaaa
tacatgcccatcattgaggaaaaactggcagctctggaccgggaggaattgctgaaacac
tttgtttccctggaattcaaccgcttcctggattactacaaggatgccggcgacctcaac
cccagcgagcacgccagggagtcgggcagatacgacgaccgggacggaagacggggcaga
ggcagaagagataatgccgacagaggcggccgggaccgccgggacggcagatcggatgac
aggcgggacggccgaaggggaagcaaggagaagccgttcagcaaagacggtccccgggcg
gaatccttcgatataatctcagtgaatgtgggcaggaatgacaaggttcttccgccccaa
atcatcggaatggtgaacgaagccaccaagctcaggcacatagaaatcggacggatcgat
attgattcggccagctccaatatgatggtggattcccgctacagctccatggtagcaggc
gccctggataactatcagtaccggggaaaaaccatttccgccaaaattgtctcctccgga
tccgggcgaaaaagcggctccggttcagcaccctccggcggcaggagcggcagaaaaggc
ggcaaacggggcggcaagagatcggaagcccgaaagaagagcggccgaaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system