KEGG   Solanum lycopersicum (tomato): 101255935
Entry
101255935         CDS       T02665                                 
Name
(RefSeq) methyl-CpG-binding domain protein 4-like protein isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101255935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sly03036]
    101255935
   03400 DNA repair and recombination proteins [BR:sly03400]
    101255935
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    101255935
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     101255935
SSDB
Motif
Pfam: HhH-GPD Colipase-like
Other DBs
NCBI-GeneID: 101255935
NCBI-ProteinID: XP_004231530
UniProt: A0A3Q7EVY8
Position
2:complement(22057648..22061920)
AA seq 544 aa
MDGRQDNKGKKRRKKHREKYYEEEGKIVKSSPYFKKVPDHEDIGSSKSIEAFSDLYMKPI
KSECMVTVETHQMSNKRKRKKNSERVDDEKSGNDNREMDAEPVLIGPPVTNLEVINEKEN
KQFGDLDEGCSSVASISVVRGDNAVAISLDDLFSQFAYKDGNFSSSKRRTEDEKIVVKSH
VCGPLSRTLISMQKSSETGSMIGNESHLSHWEGGCGPKAGKTVFEPCLSQNQINEKMIEQ
KARVVSPYFLNSRNGETEGCGLKAGKTVFEPCLSQNQINEKMIEQKARAVCPYFLNSRNG
ETEMKKGRSVECVKKRNDKKLRTKVRVVSPYFANLKVGEEIKVGKDSSNASKNCLNGRKV
SPYFQNAYREKKKSTIGSKRQKPCLSASQKRDEAYLRRSEDNMWVPPRSHFNLLQENHAH
DPWRVLVICMLLNCTTGVQVRRVVDEFFTLCPNAVAATEVAVEDIEKLLRPLGLYTKRSL
SIPRLSQEYLGKNWTHVTQLHGIGKYAADAYAIFCTGNWDQVHPNDHMLTKYWEFLHANG
SAST
NT seq 1635 nt   +upstreamnt  +downstreamnt
atggatgggaggcaggataataaaggaaagaagagaaggaagaagcacagggagaaatat
tatgaagaggaaggaaaaattgtgaaatcttccccgtattttaagaaagtgcctgaccat
gaggatattggaagtagtaaatccattgaagctttttctgatttgtatatgaagcctatc
aagagtgagtgcatggttactgttgaaacacatcagatgagtaacaaaaggaagagaaaa
aagaattctgaacgtgttgatgacgagaaatcaggaaatgataacagagaaatggatgcc
gaaccagtcttgattggtcctcctgttacaaatttggaagttattaatgagaaggagaat
aaacaatttggtgatttagatgagggatgttctagtgttgcttcaatttcagttgttcgt
ggtgataatgcagtggccattagtcttgatgatctcttttcacagtttgcatacaaagat
ggaaactttagttccagtaaaaggagaactgaagatgagaagatagtcgtcaagtcacat
gtttgtggccctctctctcgaacgctcatctccatgcagaagtcttcagaaactggttct
atgattggaaatgagagtcatttatcacattgggaaggaggctgtggaccgaaagctggt
aaaactgtgttcgagccttgcttatctcagaatcagatcaatgagaagatgattgaacag
aaagcacgagtggtttccccttactttttgaactcaaggaatggagaaactgaaggttgt
ggactgaaagctggtaaaactgtgttcgagccttgcttatctcaaaatcagatcaatgag
aagatgattgaacagaaagcacgagcggtttgcccttactttttgaactcaaggaatgga
gaaactgaaatgaaaaaaggcaggtctgtagaatgtgtgaagaaaagaaatgataaaaaa
ttacgaaccaaagttcgagtggtttccccttactttgctaacttaaaagtgggagaagaa
ataaaggtaggtaaggatagttcaaacgcttcgaagaactgtctcaatggaagaaaggtt
tctccctactttcagaatgcatatcgtgaaaagaagaagagtacaataggttcaaaaaga
cagaaaccttgtctctctgcttcccagaaaagagacgaggcatatttaaggaggagtgaa
gataacatgtgggtacctcctcgatcccattttaatctcctccaagaaaaccatgctcat
gatccttggagggtgttggttatttgcatgcttttgaattgcaccaccggtgtgcaggtt
aggagagtggtagacgagtttttcactctgtgtccaaatgctgtggcagcaacagaggtt
gctgtagaggatatagaaaagttgctgcgacctttaggattatatacaaagaggtcactg
tctattccgcgtctctctcaagaatatcttggaaaaaattggactcatgtcacacagctg
catggtattggcaagtatgcagctgatgcatatgcaatattttgtacgggcaattgggat
caagtacatccaaatgatcacatgctaacaaaatactgggaattcctgcatgcaaatggc
tcggcctcaacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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