KEGG   Solanum lycopersicum (tomato): 101258459
Entry
101258459         CDS       T02665                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101258459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101258459
   03036 Chromosome and associated proteins [BR:sly03036]
    101258459
Enzymes [BR:sly01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101258459
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101258459
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     101258459
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    101258459
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Sirohm_synth_M
Other DBs
NCBI-GeneID: 101258459
NCBI-ProteinID: XP_004240107
Position
5:complement(60411289..60443689)
AA seq 487 aa
MNSRSRYPPPWMGGGRGGGGGGSMHPNANTSFQHRNQQQYMQRSSVPHQQQFQNQQTQQW
MRRNQLSSDSAIDEVEKTVQSENGSSQDWKARLKIPPLDARYRTEDVTATKGNDFEDYFL
KRELLMGIYEKGFERPSPIQEESIPIVLTGSDILARAKNGTGKTAAFCIPALEKIDQDNN
VIQVIILVPTRELALQTSQVCKELGKHLKIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPG
RILDLARKGVCVLKDCSMLVMDEADKMLSPEFLPSIEQLIRFLPASRQILMFSATFPVTV
KAFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIFCNSV
NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN
VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITFEDRFNLYRIEQELGTEIKQIPPHI
DQAVYCG
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgaattcgagatcaagatatccgccaccttggatgggtggcggacgtggcggtggcggt
ggtggcagtatgcatcctaatgctaacactagttttcaacacagaaatcaacagcaatat
atgcagagaagttcagtgccgcatcaacaacaatttcagaaccagcaaacgcagcagtgg
atgagaaggaaccagttatcatcagattctgctattgatgaagttgaaaagactgtgcaa
tccgaaaacggaagttcacaagattggaaggctaggttgaagataccaccacttgatgct
cgatacaggacagaggatgtgacagcaaccaagggaaacgatttcgaagactattttcta
aagcgtgaactgcttatgggaatttacgaaaagggatttgagaggccatcaccaatccag
gaggagagtattccaattgttctaacaggaagtgatattttggcgagggctaagaatgga
actgggaagactgctgccttctgcatccctgcattagaaaaaattgatcaggacaacaat
gtcattcaagttattatccttgtcccgactagggaattggctcttcaaacatctcaagtt
tgcaaagaacttgggaagcacttaaaaattcaagtcatggtttccactggggggaccagc
ttaaaagacgacataatgagactgtatcagccagtgcatttgcttgttggaactcctgga
agaatacttgaccttgcaaggaaaggagtgtgtgttttgaaagattgctccatgcttgtc
atggatgaggctgataagatgctatcaccagagttcctaccttccattgagcagctgatc
cgcttcttgcctgcaagtcggcagatattaatgttttctgctacatttcctgttacagtc
aaggccttcaaagatagatacttgcagaagccttatgttatcaaccttatggatgaactt
acactcaagggtattacccagttttatgcttttgttgaagaaagacagaagcttcattgc
cttaacactttgttctcaaagcttcaaataaaccagtctataattttttgcaactctgta
aatcgtgtagaacttcttgccaagaagatcacggaactgggttattcatgcttctatata
catgcgaagatgcttcaagatcataggaacagggtttttcatgacttccgcaatggtgcc
tgcaggaacctcgtctgtactgatctgtttactagagggatagacattcaagcagtcaat
gttgttatcaactttgatttcccaaagaactcagaaacatatttacacagggttgggcgg
tctgggagattcggtcacctgggtttagctgtcaacctaattacttttgaggatcgcttc
aatttgtatagaattgaacaagagctaggaaccgagattaagcaaattccgccacatata
gaccaggctgtgtattgcgggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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