KEGG   Solanum lycopersicum (tomato): 101258663
Entry
101258663         CDS       T02665                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03022  Basal transcription factors
sly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101258663
  09124 Replication and repair
   03420 Nucleotide excision repair
    101258663
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sly03021]
    101258663
   03400 DNA repair and recombination proteins [BR:sly03400]
    101258663
Transcription machinery [BR:sly03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     101258663
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     101258663
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 101258663
NCBI-ProteinID: XP_004241513
UniProt: A0A3Q7GY47
Position
6:complement(44100671..44106024)
AA seq 290 aa
MTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQV
VVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALS
MALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQH
SAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHK
NTIDMGFICSVCLSIFCKHHKKCSTCGSNFGEARKQDPSASDQRRTSYGS
NT seq 873 nt   +upstreamnt  +downstreamnt
atgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggtt
gatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattc
atatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagta
gttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtca
atgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtcc
ttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttct
atggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcgg
atattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattca
attttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcat
tctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagta
tcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagc
ttcttgcaacttcccagacctgttggagttgacttccgtgcatcgtgcttttgccataaa
aacacgattgacatgggtttcatatgctctgtttgtttatcaatattctgcaagcatcac
aagaaatgctcaacttgcggatcaaattttggggaggcacgaaagcaggatccctcagcc
tcggatcagaggaggacttcatatggtagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

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