KEGG   Solanum lycopersicum (tomato): 101260019
Entry
101260019         CDS       T02665                                 
Name
(RefSeq) ribosomal RNA small subunit methyltransferase NEP1
  KO
K14568  rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    101260019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sly03009]
    101260019
Enzymes [BR:sly01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.260  rRNA small subunit pseudouridine methyltransferase Nep1
     101260019
Ribosome biogenesis [BR:sly03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    101260019
SSDB
Motif
Pfam: EMG1
Other DBs
NCBI-GeneID: 101260019
NCBI-ProteinID: XP_004251974
UniProt: A0A3Q7JTZ8
Position
12:7084269..7090930
AA seq 278 aa
MVRAYKVKGEKRKKKGENYDKEEEIEVPLEEEESTKRVKTEHSEADTEAAERVVDLLSGI
PVVATDQTNKPGVVFIIERASLEIAKIGKTYQLLNSDEHSNFLKKNGRNPSDYRPDIAHQ
AMLSILDSRVNKAGRLKALYVRTEKGVLFEVKPHVRIPRTFKRFSGIMLQLLQKLSITAV
GKREKLLRVIKNPVTQYLPIDCRKIGFSHSSEKLVDIQDYVNGVNNDMNLVFVVGAMAHG
KIDKDYVEDYLSISDYPLSAAYCISMITNAMERKWKIL
NT seq 837 nt   +upstreamnt  +downstreamnt
atggtgcgtgcatacaaagtaaaaggggagaaaagaaaaaagaaaggagagaattatgat
aaagaagaagaaattgaggtacctttggaagaggaggaatcaacaaaaagagtgaagaca
gaacactctgaggcagacaccgaggcagctgaaagagttgtagatttactatctggcatt
cctgttgttgcaactgatcaaaccaataaacctggtgttgttttcatcattgaaagagct
tctcttgaaattgctaaaattggaaagacgtaccaacttctgaattctgatgaacactcc
aactttctgaagaagaatggccggaacccttctgattatcggcctgatattgcgcatcag
gcaatgctttcaattttagatagccgagtaaataaagctgggcgactgaaagctttgtat
gtgaggactgagaaaggtgtcctttttgaagtaaaacctcatgttcgtatccctaggact
tttaagagattttctggcatcatgttgcagctgctacaaaagctgagcataactgctgtt
ggtaagcgagagaaactgttgcgtgttataaaaaaccctgttacacagtacctacccatc
gactgtcggaagataggcttctctcatagttctgagaagctggtggatattcaggactat
gttaatggcgtcaacaatgacatgaaccttgtctttgtggttggggctatggcccatggg
aaaattgataaagattatgttgaagattatttatcaatttcagattatccattgagtgct
gcatactgcatatcaatgatcacgaatgccatggagcgcaaatggaagattttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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