KEGG   Solanum lycopersicum (tomato): 101261187
Entry
101261187         CDS       T02665                                 
Name
(RefSeq) nijmegen breakage syndrome 1 protein isoform X1
  KO
K10867  nibrin
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    101261187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sly03032]
    101261187
   03400 DNA repair and recombination proteins [BR:sly03400]
    101261187
DNA replication proteins [BR:sly03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    101261187
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     101261187
    BRCA1-C complex
     101261187
SSDB
Motif
Pfam: FHA BRCT Nbs1_C PTCB-BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 101261187
NCBI-ProteinID: XP_004232653
Position
2:complement(45994724..46011481)
AA seq 563 aa
MVWGLFPIDPLPGEDSYYFFNEGTYKVGRKGCDVIVNKDKGVSRIHAEILVDEMISLDQS
KKPSNILSKVRVRDCSKYGTFLNKNLDSKEKVHEFPNKETMLKDGDLVSFGTGNATYRFS
YVSFIFFICSPKHSKTNQLITKKVSSIGASITKKWSLDCSHVLVDDSFPLSDDLIDAIVA
RKPLVQYSWVELIAGKNICTDIPSHSSHAPKLMLEGVSVQVVDPQSRECCLKGYAFLLEP
ENKYKFEGRLQSLLEVGGANISSSEMVSEKNGNDRVVCVVPAGSNNFKSFSNQSSLPWVS
EIDLVSAVLSGYLDPILITSPPVLITSSCSTDETVVADSDAETESTKSDHVAAAFCSIES
SEHDSKGTTSIHKLESVEYHNEDKCTVQIEMPRDKVSMRDTSPSSTKHIKHDGSHITHDD
ATIHDGEGGYIRRLGVKSDNTVVKEDITDQRENGKLDIIYSQDLIVRDSIMSLPVSSSSN
GGVANFKRFRKANAPSQNSFAIFIPFSKHPYQESECKNEDVAESIREEKKRKQMEAIAED
LFKSEKGKKSGVAGSLHGLFARR
NT seq 1692 nt   +upstreamnt  +downstreamnt
atggtttggggcctttttcctattgatcctcttccaggtgaagatagttactatttcttc
aacgaaggtacatataaagtgggtcgaaaaggatgtgatgtcattgtcaacaaggataaa
ggagtttcaaggatacatgcagaaattttagtagatgagatgatttctttggatcagtcg
aagaaaccctcaaatattctgtctaaagtacgtgtaagagactgctcaaagtatggcaca
ttcctcaacaagaatctggattcgaaggagaaagttcatgagtttccaaataaagaaacg
atgctcaaggatggcgatctagtttcatttggaactggtaatgcaacttacagattctct
tacgtatcattcatatttttcatttgctccccgaagcattcaaaaacaaatcaacttatt
acaaagaaggtttcatcaataggtgcaagtataactaagaagtggagtttggattgctca
catgtgcttgtagatgactcctttcctctgagtgatgacctgattgatgctattgtcgct
agaaaacccttggttcagtatagctgggtcgagctaattgcaggaaaaaatatttgcacc
gatattccaagccacagttctcatgcaccaaagttgatgctggaaggagtttccgtgcaa
gtggtagatcctcaatcccgtgagtgttgtttgaaaggatatgcttttttgctggaacca
gaaaacaagtataaatttgagggcaggttgcagtccttactggaagttgggggtgccaac
atttcttcttctgaaatggtctcggagaaaaatggaaatgaccgtgtggtatgtgtagtt
ccagcaggatcaaacaactttaagtctttttctaaccaaagttccttgccttgggtgagt
gaaatagatctggtttctgcggttctatccggatatctggatcctattcttatcacatcc
ccaccggtgctcattacctcttcatgctccacagatgagacagtggttgcagactcagat
gccgaaacagaaagtacaaaatcagatcacgtcgctgctgctttctgttcaatagaatct
tctgagcatgacagcaagggaacaacttctatacacaagttagaatctgttgaatatcac
aacgaagataagtgtactgttcaaatagagatgcctagggataaggtatccatgagggac
acatctcccagttcaacaaaacatattaaacacgatggaagtcacataacacatgatgat
gctaccatccatgacggcgaaggtggttacatcaggcgcctaggtgtcaaaagtgataat
acagtggtaaaagaagatatcacggatcagcgggaaaatgggaagttggatatcatatat
agccaagatttaattgttagagattctatcatgtcattaccagtctcttcttcatcaaat
ggcggagttgcaaattttaagcgcttccgtaaggcaaatgctccatcccagaatagcttt
gcaatcttcattccattctccaagcatccataccaagaatctgagtgtaagaatgaggat
gttgctgaatctattagagaagagaaaaaaagaaaacagatggaagcaattgccgaggac
ctgtttaaaagtgaaaagggaaaaaaaagtggtgttgctggttccttgcatgggttgttt
gctcgtagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

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