KEGG   Solanum lycopersicum (tomato): 101266448
Entry
101266448         CDS       T02665                                 
Name
(RefSeq) polyadenylate-binding protein 7
  KO
K13126  polyadenylate-binding protein
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03015  mRNA surveillance pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101266448
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101266448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101266448
   03041 Spliceosome [BR:sly03041]
    101266448
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101266448
   mRNA cycle factors
    Stress granule specific factors
     101266448
Spliceosome [BR:sly03041]
 Complex C
  Other components
   Complex C specific factors
    101266448
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_occluded RRM_3 DUF6838
Other DBs
NCBI-GeneID: 101266448
NCBI-ProteinID: XP_004246907
Position
9:2086622..2093123
AA seq 605 aa
MASLYVGDLHDSVTDGQLYEAFSEFKNLVNVRVCRDSSTGRSLCYGYVNFISSEDAVRAI
EVKNHSTLNGKAIRVSWSRRDSDVRRSGAGNVFVKNLNDTIDSTKLEEIFQKFGNILSCK
VAVSEDGRSKGFGFVQFETEDSANTAIEELNGSAVGGKEMYVGKFVKKSDRVLPSPDEKY
TNLFIKNLGLDISEEHLREKFSEFGKIISLIIAKDENGCSKGFGYVNFENPDDARRAREA
MNGSKLGCKILYVARAQKKTEREQILRRLFEERRKARLIKYQGSNVYVKNIDGDVKDHEL
RELFSRCGKITSAKLMLDEKGVSRGFGFVCFSRPEEANKAVNTFHGYMLGQKTLYVAIAQ
RKEERQTQLLLKHAQGITGLTGSSAFFPGGYSSLYYPALGDLQVSEQPGLLYQPLSMRHG
WMVNGFPNSISPSYQASLIPSASQYRQYKGKKNGHMPVPDVPNWKQSVASSKQPSYTQVV
KYAPNGCGMKKGCVFSAGTSTKGSLSEVSDNLSTMLTDAPPKQQKQILGDHLYPLISEYK
PHLAAKVTGMLLEMDNSELLSLFKSPESLAAMVQQAIETLNFPKTEVSPRDSCLPNLLST
KLQST
NT seq 1818 nt   +upstreamnt  +downstreamnt
atggcgtcgctatacgtcggagaccttcacgactctgtgaccgacggccaactctacgaa
gcattctcagagttcaaaaacctcgttaacgttcgcgtctgtcgcgactcttctacgggc
cgttctctctgttacggctacgttaacttcatttcttctgaagacgctgtgcgtgctatt
gaggtgaaaaatcattccaccctcaatggaaaagctataagggttagttggtcgcgtcgt
gattctgatgtgagaagaagtggagctggaaatgtattcgtcaagaatctaaatgataca
attgacagcacgaagcttgaagaaatattccagaagttcggaaatatcttatcctgtaaa
gttgctgtttctgaggatggaaggagtaaaggatttggctttgtacagtttgagactgag
gacagtgcaaacactgctattgaggagctcaatggatctgctgttggaggaaaggagatg
tatgtagggaagtttgtcaaaaagagtgaccgggtcctgcccagccctgatgagaaatat
acaaatttgttcatcaagaacctgggtcttgacatctcagaagagcatcttagagagaag
ttctctgaatttgggaaaattatcagcttgatcattgcgaaagatgagaatggatgttca
aaaggttttggttatgtgaactttgagaatccagatgatgctaggagagcaagggaagct
atgaatggatcaaaacttggctgcaagatcttgtatgtagcaagagcacaaaagaaaaca
gaacgcgaacagatattgaggcgtttgtttgaggagagaaggaaggcgcgacttattaag
taccagggttcaaatgtgtacgtcaaaaatatcgatggtgatgtcaaggatcacgagttg
cgtgaactgttcagtcgatgtggcaaaatcacttctgcaaaacttatgctagatgaaaag
ggagtcagcaggggctttggatttgtatgtttttccagaccagaggaggccaataaagcg
gtgaatacttttcatggatatatgttaggccaaaagacattgtatgtggctattgctcag
aggaaagaggaaaggcaaactcaattactgcttaagcatgcacaaggaattacaggtctc
actggatcttccgcttttttccctggtggatattcctctctgtactacccagcccttggt
gatctacaagtatctgaacaaccagggctgttgtatcagcctctgagtatgaggcatggt
tggatggtcaatggatttcctaactctattagcccttcttatcaagcttccttgattcct
agtgcttcacaatataggcaatataagggaaagaagaacggacatatgccagttccagat
gtgcctaactggaagcaatcagtggcatcatcaaaacaacctagctatactcaagtggtc
aaatatgcaccaaatggttgtggtatgaagaaaggatgtgttttctctgctggcactagt
acaaaaggatcattatctgaggtttcagacaacctgagtaccatgcttaccgatgcacct
cctaagcagcagaaacagatacttggagaccacctttatcctctaattagtgaatacaag
ccccatcttgctgcaaaggttacaggaatgcttttggaaatggacaactcagagctttta
tcattgttcaagtcaccagaatctctggcagcaatggtgcaacaagcaattgagacgctc
aacttccccaagactgaagtttcccctcgagattcatgtcttccaaatcttctctctact
aagttgcagtcaacttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (69)   

Download RDF
DBGET integrated database retrieval system